FC928219

Overview
NameFC928219
Unique NameFC928219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3920 contig Ccv1_Contig3920:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928219 vs. ExPASy Swiss-Prot
Match: RBM12_PONAB (RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   70 SPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            S  PS  KR   +   E    + ++GLPF  +   ++ FFK   I+ED I+IA  P+GKATGE +VEF +  + K A+C+ K  +G+R++++ P T
Sbjct:  411 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 506          
BLAST of FC928219 vs. ExPASy Swiss-Prot
Match: RBM12_MACMU (RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   70 SPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            S  PS  KR   +   E    + ++GLPF  +   ++ FFK   I+ED I+IA  P+GKATGE +VEF +  + K A+C+ K  +G+R++++ P T
Sbjct:  411 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 506          
BLAST of FC928219 vs. ExPASy Swiss-Prot
Match: RBM12_HUMAN (RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   70 SPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            S  PS  KR   +   E    + ++GLPF  +   ++ FFK   I+ED I+IA  P+GKATGE +VEF +  + K A+C+ K  +G+R++++ P T
Sbjct:  411 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 506          
BLAST of FC928219 vs. ExPASy Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   70 SPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            S  PS  KR   +   E    + ++GLPF  +   ++ FFK   I+ED I+IA  P+GKATGE +VEF +  + K A+C+ K  +G+R++++ P T
Sbjct:  411 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPIT 506          
BLAST of FC928219 vs. ExPASy Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 363
            +++RGLPF   K EIVQFF   +I+ + I +   P+GK TGEA+V+F S E A++A+ K K  IG RY+E+F S+ +
Sbjct:  113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 189          
BLAST of FC928219 vs. ExPASy Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 363
            +++RGLPF   K EIVQFF   +I+ + I +   P+GK TGEA+V+F S E A++A+ K K  IG RY+E+F S+ +
Sbjct:  113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 189          
BLAST of FC928219 vs. ExPASy Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 363
            +++RGLPF   K EIVQFF   +I+ + I +   P+GK TGEA+V+F S E A++A+ K K  IG RY+E+F S+ +
Sbjct:  113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 189          
BLAST of FC928219 vs. ExPASy Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 363
            +++RGLPF   K EIVQFF   +I+ + I +   P+GK TGEA+V+F S E A++A+ K K  IG RY+E+F S+ +
Sbjct:  113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 189          
BLAST of FC928219 vs. ExPASy Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPSTPD 363
            +++RGLPF   K EI+QFF   +I+ + I +   P+GK TGEA+V+F S E A++A+ K K  IG RY+E+F S+ +
Sbjct:  113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 189          
BLAST of FC928219 vs. ExPASy Swiss-Prot
Match: HNRH3_HUMAN (Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens GN=HNRNPH3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  133 LKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKATGEAYVEFVSVEEAKRAMCKDKMTIGSRYVELFPST 357
            +++RGLPF   K EIVQFF+  +I+ + I +     G++TGEA+V+F S E A+ A+ K K  IG RY+E+F S+
Sbjct:   18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSS 92          
The following BLAST results are available for this feature:
BLAST of FC928219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RBM12_PONAB1.562e-1438.54RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE... [more]
RBM12_MACMU1.562e-1438.54RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 ... [more]
RBM12_HUMAN1.562e-1438.54RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE... [more]
RBM12_MOUSE2.041e-1438.54RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE... [more]
HNRPF_RAT2.256e-1346.75Heterogeneous nuclear ribonucleoprotein F OS=Rattu... [more]
HNRPF_MOUSE2.256e-1346.75Heterogeneous nuclear ribonucleoprotein F OS=Mus m... [more]
HNRPF_MACFA2.256e-1346.75Heterogeneous nuclear ribonucleoprotein F OS=Macac... [more]
HNRPF_HUMAN2.256e-1346.75Heterogeneous nuclear ribonucleoprotein F OS=Homo ... [more]
HNRPF_BOVIN2.947e-1345.45Heterogeneous nuclear ribonucleoprotein F OS=Bos t... [more]
HNRH3_HUMAN7.257e-1245.33Heterogeneous nuclear ribonucleoprotein H3 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO15FM1 TF Citrus clementina cDNA clone KN0AAP9YO15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928219 ID=FC928219; Name=FC928219; organism=Citrus clementina; type=EST; length=681bp
CAGGATTACTACTTTGCCGTGGCTTCAGAGGTGAATTATGAAGGGATCTA
TGATAATGATTTCCATGGAAGTCCTCCACCATCACGAGCTAAGAGGTACA
ATGACAAAGATCAAATGGAACATACTGAAATTTTGAAGATGCGTGGCCTT
CCTTTCTCTGTGAAGAAATCTGAAATAGTTCAATTCTTTAAAGACTACAA
GATAATTGAGGATAAGATACACATTGCATGCCGACCTGATGGTAAGGCTA
CCGGTGAGGCATATGTGGAGTTTGTTTCTGTAGAGGAGGCTAAGAGAGCA
ATGTGTAAAGACAAGATGACAATTGGTTCGAGGTATGTCGAGCTGTTCCC
TTCCACACCTGATGAAGCTCGGCGTGCTGAATCAAGATCAAGACAGTGAA
GAGGCGTTAATTGTGGCTAGAGGTTTTAACGGCTGAAATATATTTCTTTT
CATCTTTGTAGCTTTTACCAGCTGTGCTAGTATGCATGCACCCTCTGATT
TCACGTGAAGCTTTCATTCTGGTGCCACAATTTTTTTTTTGGGGGCTCAT
TTAGATTGTATGCATAGATTATTCCCCAATATAAATTGTCATCCTTTGGA
TATTTGAATTTTTATTTCCTTATAGAAGTTATAAACTTGAACCTTTTTGT
ATATTGTTTGCTTAAGGACCCTGTCACTTGG
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