FC928221

Overview
NameFC928221
Unique NameFC928221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928221_ssr21 microsatellite FC928221_ssr21:21..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:13..500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: PMGI_RICCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.007e-59
Identity = 104/130 (80.00%), Postives = 119/130 (91.54%), Query Frame = 2
Query:   98 WKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDG 487
            WKL +HP+L +   +A+VVLDGWGE KPD+YNCIHVA+TPTMDSFKK+APERWRL++AHG+AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+ EGF Y+K  F+ GTLHLIGLLSDG
Sbjct:    5 WKLADHPKLPKGKTIAMVVLDGWGEAKPDQYNCIHVAETPTMDSFKKTAPERWRLIKAHGTAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEGEGFKYVKECFDKGTLHLIGLLSDG 134          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: PMGI_MESCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 4.678e-57
Identity = 102/131 (77.86%), Postives = 115/131 (87.79%), Query Frame = 2
Query:   95 NWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDG 487
            +WKL +HP+L +   +A+VVLDGWGE   ++YNCIHVA+TPTMDS K+ APE+WRL+RAHG AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLAL SGKIY  EGFNYIK SFET TLHLIGLLSDG
Sbjct:    7 SWKLADHPKLPKGKTLAMVVLDGWGEASANQYNCIHVAETPTMDSLKQGAPEKWRLIRAHGKAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALESGKIYDGEGFNYIKESFETNTLHLIGLLSDG 137          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: PMGI_MAIZE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.042e-56
Identity = 102/131 (77.86%), Postives = 114/131 (87.02%), Query Frame = 2
Query:   95 NWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDG 487
            +W L +HP+L +   VAVVVLDGWGE  PD+YNCIHVA TP MDS K  APE+WRLV+AHG+AVGLP++DDMGNSEVGHNALGAGRIFAQGAKLVD ALASGKIY  +GFNYIK SFE+GTLHLIGLLSDG
Sbjct:    7 SWTLPDHPKLPKGKSVAVVVLDGWGEANPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDQALASGKIYDGDGFNYIKESFESGTLHLIGLLSDG 137          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: PMGI_TOBAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.778e-56
Identity = 101/132 (76.52%), Postives = 115/132 (87.12%), Query Frame = 2
Query:   92 DNWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDG 487
            D WKLK+HP+L +   VAV+VLDGWGE KP+++N IHVA+TP M S K  APE+WRL++AHG+AVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIY+ EGF Y+K  FE GTLHLIGLLSDG
Sbjct:    6 DAWKLKDHPKLPKGKTVAVIVLDGWGEAKPNEFNAIHVAETPVMYSLKNGAPEKWRLIKAHGNAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYEGEGFKYVKECFEKGTLHLIGLLSDG 137          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: PMG2_ARATH (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Arabidopsis thaliana GN=At3g08590 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 7.468e-55
Identity = 96/131 (73.28%), Postives = 111/131 (84.73%), Query Frame = 2
Query:   95 NWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDG 487
            NWKL +HP+L +   + ++VLDGWGE  PD+YNCIH A TP MDS K   P+ WRL++AHG+AVGLP+EDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+DEGF YI  SFE GT+HLIGLLSDG
Sbjct:    8 NWKLADHPKLPKGKTIGLIVLDGWGESDPDQYNCIHKAPTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEDEGFKYISQSFEKGTVHLIGLLSDG 138          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: PMG1_ARATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 1.192e-52
Identity = 93/130 (71.54%), Postives = 108/130 (83.08%), Query Frame = 2
Query:   98 WKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDG 487
            WKL +HP+L +   +AV+VLDGWGE  PD+YNCIH A TP MDS K  AP+ W L++AHG+AVGLP+EDDMGNSEVGHNALGAGRIFAQGAKL D ALASGKI++ EGF Y+  SFET TLHL+GLLSDG
Sbjct:    7 WKLDDHPKLPKGKTIAVIVLDGWGESAPDQYNCIHNAPTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIFAQGAKLCDQALASGKIFEGEGFKYVSESFETNTLHLVGLLSDG 136          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: PMGI_PRUDU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.243e-25
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 2
Query:  290 LPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDG 487
            LPTEDDMGNSEVGHNALGAGRIFAQGAKLVD AL +GK+Y+ EGF YIK SF T TLHLIGLLSDG
Sbjct:    1 LPTEDDMGNSEVGHNALGAGRIFAQGAKLVDSALETGKLYEGEGFKYIKESFPTNTLHLIGLLSDG 66          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIN (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.573e-20
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  128 RNNIVAVVVLDGWGEYK--PDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDG 487
            R+  V +++LDG G     P+  N I  A  P ++      P     ++AHG AVG+P++DDMGNSEVGHN LG+GRIF QGAKLV  ++ASG I+  + +  +         TLHL+GL SDG
Sbjct:   14 RSRKVLLIILDGVGYSPKGPESGNAIAGAKLPFLNRVWNQFPTLH--IQAHGKAVGMPSDDDMGNSEVGHNVLGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDG 135          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.573e-20
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  128 RNNIVAVVVLDGWGEYK--PDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDG 487
            R+  V +++LDG G     P+  N I  A  P ++      P     ++AHG AVG+P++DDMGNSEVGHN LG+GRIF QGAKLV  ++ASG I+  + +  +         TLHL+GL SDG
Sbjct:   14 RSRKVLLIILDGVGYSPKGPESGNAIAGAKLPFLNRVWNQFPTLH--IQAHGKAVGMPSDDDMGNSEVGHNVLGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDG 135          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_SILST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter sp. (strain TM1040) GN=gpmI PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.509e-18
Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN-YIKPSFET-GTLHLIGLLSDG 487
            V + +LDGWG  +P   N  ++A TPT+D+  +S P   RLV  HG  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G  Y ++    +I    ET G  HL+GL+SDG
Sbjct:    7 VVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTA-RLV-THGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSDG 121          
The following BLAST results are available for this feature:
BLAST of FC928221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
PMGI_RICCO1.007e-5980.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MESCR4.678e-5777.862,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MAIZE1.042e-5677.862,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_TOBAC1.778e-5676.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG2_ARATH7.468e-5573.28Probable 2,3-bisphosphoglycerate-independent phosp... [more]
PMG1_ARATH1.192e-5271.542,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_PRUDU1.243e-2584.852,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEPIN4.573e-2044.35Probable 2,3-bisphosphoglycerate-independent phosp... [more]
GPMI_LEPIC4.573e-2044.352,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILST2.509e-1844.922,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 TF Citrus clementina cDNA clone KN0AAP12YJ14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928221 ID=FC928221; Name=FC928221; organism=Citrus clementina; type=EST; length=488bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
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