FC928222

Overview
NameFC928222
Unique NameFC928222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig836 contig Ccv1_Contig836:29..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC928222 vs. ExPASy Swiss-Prot
Match: LFS_ALLCE (Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 37/131 (28.24%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:   46 KWQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGHPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTV--APKENGCYIEWKYEVEPVKG 432
            KW G+    L   K EQ W  L+DF  L K  P+L+ C  ++G +   GCVR+  G   P++ +         W K+KL+A++ + M+ +Y   +   G+  Y +T+ +   P+  G   +W ++ + ++G
Sbjct:   20 KWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEE--------FWAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIVEGPEHKGSRFDWSFQCKYIEG 142
The following BLAST results are available for this feature:
BLAST of FC928222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LFS_ALLCE3.420e-1428.24Lachrymatory-factor synthase OS=Allium cepa GN=LFS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YO16FM1 TF Citrus clementina cDNA clone KN0AAP9YO16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928222 ID=FC928222; Name=FC928222; organism=Citrus clementina; type=EST; length=675bp
CGAATGGCTGATAATGATGATCATCATGGGAAGCAAGAGCAACCAAAATG
GCAAGGCAGGGCTTGTGAAGAGCTAACAGGCGTGAAAGCTGAACAGATAT
GGGCTTTCTTGGAAGATTTCTTCGGCTTAGACAAGTGGTTTCCAACTCTA
ACAACATGCATCCCTATTCAAGGCATTTCTGGGCACCCCGGCTGCGTGCG
TTTTTGCGCCGGATTCAAAACTCCGGTCGATAATAAAGATGACGATCATG
AGCAAAGTGTGAACTGGACTAAGCAAAAATTGCTAGCCATCAATGCAGAG
GAAATGACTTTAACCTATTCCATAGTAGATGGAAATGTTGGTTTCTATGG
ATATGTATCGACACTGACAGTGGCGCCTAAGGAGAATGGGTGTTACATTG
AGTGGAAGTATGAAGTTGAGCCTGTCAAAGGATGGAGACTTGAGGATTTG
GATTGTTTTATTAGCAGTGGCTTGCAAGTTATGGCTAGGAGAATGAAAGA
AGCTCTTCAAGCTTATGAAGTCATTATGCACTACTCTAGTAGTTCATGAA
TCCATGAATTTGTTATTGCTGTTTTTGTTTATTGGTGTTCTTATTATGTT
GTTTGTGTTGGCTAGGTTTTTATTGATGAATATTGAAGGGATAATATTTA
GCAACAAAAAAAAAAAAAAAAAAAA
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