FC928223

Overview
NameFC928223
Unique NameFC928223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2161 contig Ccv1_Contig2161:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928223 vs. ExPASy Swiss-Prot
Match: ATG10_HUMAN (Autophagy-related protein 10 OS=Homo sapiens GN=ATG10 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.150e-18
Identity = 49/136 (36.03%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  365 GTSCFKEEE----PTDSATLVQNYDCDKHY-YDFHVIYNASYRVPVLYFRAYCSGGQPLVLDEIEKGLPSCSAKALSESKWTFITHEEHPYLNRPWYKLHPCGTGEWMKLLFLGDTTQKKNGVAIELYLVAWFSVV 757
            G +C   EE    P D   +++     +   Y++HV+Y+ SY+VPVLYFRA    G+PL L +I +G+  C    L +  W  IT +EHP L +P++ LHPC T E+M  +        KN      Y+ +W S+V
Sbjct:   65 GQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQKINKN----VNYITSWLSIV 196          
BLAST of FC928223 vs. ExPASy Swiss-Prot
Match: ATG10_MOUSE (Autophagy-related protein 10 OS=Mus musculus GN=Atg10 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.104e-17
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  443 YDFHVIYNASYRVPVLYFRAYCSGGQPLVLDEIEKGLPSCSAKALSESKWTFITHEEHPYLNRPWYKLHPCGTGEWMKLLFLGDTTQKKNGVAIELYLVAWFSVV 757
            +++HV+Y+ SY+VPVLYFRA    G+PL L++I +G+  C    L +  W  IT +EHP L +P++ LHPC T E+M  +        +N      Y+ +W S+V
Sbjct:   95 HEYHVLYSCSYQVPVLYFRASFLDGRPLALEDIWEGVHECYKPRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTAVLKNSQKINRN----VNYITSWLSLV 195          
BLAST of FC928223 vs. ExPASy Swiss-Prot
Match: ATG10_DICDI (Autophagy-related protein 10 OS=Dictyostelium discoideum GN=atg10 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 61/217 (28.11%), Postives = 97/217 (44.70%), Query Frame = 2
Query:  152 LSLSEFSLAAHTLADKWKRFNPSFPSWSWVACRKQPWFGSREAEGYLSLENICLLSLRKEDRGEETCQGEEGTSC--FKEEEPT--DSATLV-----QNYDCDKHYYDFHVIYNASYRVPVLYFRAYCS-GGQPLVLDEIEKGLPSCSAKALSESKWTFITHEEHPYLNRPWYKLHPCGTGEWMKLLFL-----GDTTQKKNGVAIELYLVAWFSVV 757
            L+  +F   A  L  KW       P W W    +     + E++GY + +    ++    +      + +   +   F+E + T  DS+T +      N + +   + F +IY+ SY+VPVLY   + S    PL  +EI   LP  +     +S   +IT  EHP L  P Y+LHPC T   MKL+ L      D   KK     + YL++W S++
Sbjct:    2 LTSKDFRDQAINLIKKWNNIIDEIP-WQWNQINEL----NNESKGYFTTKRYHKINNNNNNNNNNNIENKNNNNIENFEEIKETIDDSSTTIIKSNNNNNENNIIIFQFDIIYSKSYQVPVLYLNGFSSFDSSPLSWNEIWNNLPLSNLDKNQQSTIPYITQVEHPILGNPCYQLHPCETDNLMKLILLKEKDYNDNNDKKEYFK-DYYLLSWLSII 212          
The following BLAST results are available for this feature:
BLAST of FC928223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATG10_HUMAN2.150e-1836.03Autophagy-related protein 10 OS=Homo sapiens GN=AT... [more]
ATG10_MOUSE3.104e-1739.05Autophagy-related protein 10 OS=Mus musculus GN=At... [more]
ATG10_DICDI1.304e-1528.11Autophagy-related protein 10 OS=Dictyostelium disc... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP4YN05FM1 TF Citrus clementina cDNA clone KN0AAP4YN05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928223 ID=FC928223; Name=FC928223; organism=Citrus clementina; type=EST; length=758bp
CTGATAAATTTCGTTCAAAAGAGACAAGAACAAGCGAAGACATGGTTTAT
TTCAGACACAAATTTCACGAGGCCAGAGGCTTCTTCTATTAAAGCTTGGT
TTCTTTTTAGTCTGCAGTGCAATCATGGACATTTTAGCTTGGGATGGAAC
CCTCTCGTTAAGTGAGTTTTCTCTTGCTGCTCATACGTTGGCCGATAAAT
GGAAAAGATTCAATCCCAGTTTCCCTTCATGGTCATGGGTTGCTTGTAGA
AAACAACCTTGGTTTGGATCTCGTGAGGCGGAGGGATACTTGTCACTGGA
AAACATTTGCCTTCTCAGTTTAAGAAAGGAAGATCGAGGTGAAGAAACTT
GCCAAGGGGAAGAAGGGACCAGTTGCTTTAAGGAAGAAGAACCCACTGAT
TCTGCCACTTTAGTTCAGAACTATGATTGTGACAAGCACTACTATGATTT
TCATGTAATCTACAATGCTTCATATAGGGTTCCAGTGCTATATTTCCGTG
CATACTGCAGTGGTGGACAGCCTTTGGTGTTGGATGAAATTGAAAAAGGA
CTCCCTTCCTGTTCTGCTAAGGCTTTATCAGAGTCAAAATGGACATTCAT
AACTCACGAGGAACATCCATACTTGAACAGGCCATGGTATAAATTACATC
CATGCGGAACAGGCGAGTGGATGAAGCTGCTTTTCCTTGGTGATACCACA
CAGAAGAAAAATGGAGTTGCAATTGAACTATATCTGGTGGCTTGGTTCTC
AGTTGTTG
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