FC928864

Overview
NameFC928864
Unique NameFC928864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:70..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.905e-53
Identity = 102/133 (76.69%), Postives = 110/133 (82.71%), Query Frame = -1 
Query:  223 MGVPXXXXXXXXXXXXXXKRPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 621
            M VP               RPQSDR+I+VKE+WRRPKGIDSRVRRKF G  LMPN+GYG DKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYC EIAHNVSTKKRK IVERA+QLDVVVTN+LARLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133
[Close]
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.235e-52
Identity = 99/133 (74.44%), Postives = 109/133 (81.95%), Query Frame = -1 
Query:  223 MGVPXXXXXXXXXXXXXXKRPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 621
            M VP               RPQSDR+I+VKE+WRRPKGIDSRVRRKF G  LMPN+GYG DKKTRHYLPNGFKKF+VHN +ELELLMMHNRTYC EIAHN+STKKRK IVERA+QLDVVV+NKL RLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133
[Close]
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = -1 
Query:  223 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            R QSDR + +K NWR+P+GID+RVRR+F G +LMPNIGYG +KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = -1 
Query:  223 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            R QSDR + +K NWR+P+GID+RVRR+F G +LMPNIGYG +KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = -1 
Query:  223 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            R QSDR + +K NWR+P+GID+RVRR+F G +LMPNIGYG +KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = -1 
Query:  223 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            R QSDR + +K NWR+P+GID+RVRR+F G +LMPNIGYG +KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = -1 
Query:  223 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            R QSDR + +K NWR+P+GID+RVRR+F G +LMPNIGYG +KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.416e-40
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = -1 
Query:  223 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            R QSDR   +K NWR+P+GID+RVRR+F G  LMPNIGYG +KKTRH LPNGF+K +VHNV ELE+LMM NR YC EIAH VS+KKRK IVERA QL + VTN  ARLRSQE E
Sbjct:   21 RHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134
[Close]
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 2.416e-40
Identity = 76/114 (66.67%), Postives = 96/114 (84.21%), Query Frame = -1 
Query:  223 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            R QSDR + +K NWR+P+GID+RVRR+F G +LMPNIGYG +KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + +TN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135
[Close]
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.671e-39
Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = -1 
Query:  223 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            R QSDR + ++ NWR+P+GID+RVR  F G +LMPNIGYG +KKT+H LP+GFKKF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135
The following BLAST results are available for this feature:
BLAST of FC928864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL321_ARATH1.905e-5376.6960S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH1.235e-5274.4460S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_RAT1.850e-4067.5460S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG1.850e-4067.5460S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE1.850e-4067.5460S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA1.850e-4067.5460S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN1.850e-4067.5460S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_SPOFR2.416e-4070.1860S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_BOVIN2.416e-4066.6760S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_ICTPU2.671e-3966.6760S ribosomal protein L32 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CB07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928864 ID=FC928864; Name=FC928864; organism=Citrus clementina; type=EST; length=627bp
ATATGCATAATTAATAAAAGGTTTGGCCATAAACCTTAACTCCTAAGTTG
ACATAACATTAATCATGCTCCACAAAAGACAACAAATTCAAAATATCATT
CAGGTGACAAATAAAAAATACATCATAATTCAACCCTGGAAATGTTCATC
CATTCCAAAGACAACCTAGGAAACATTTGGCCAAAAGCAAACACTAACAC
AAAATATAAAAACCAATTTTTACTCCTCCTCCTGGCTGCGCAACCTGGCC
AATTTGTTGGTGACCACAACATCCAATTGTGCAGCACGCTCGACAATCTC
CTTTCTCTTCTTGGTTGATACATTGTGGGCTATCTCAACACAATAAGTCC
TGTTGTGCATCATCAAGAGTTCCAGTTCATTGACATTGTGCACAACAAAC
TTCTTGAATCCATTGGGCAGATAGTGGCGTGTTTTCTTGTCCCAACCGTA
GCCAATATTGGGCATCAAAACACATCCATTGAACTTTCTCCTGACACGTG
AATCAATACCCTTCGGCCTTCGCCAATTTTCCTTCACTGATATCTTCCTG
TCACTCTGGGGCCTCTTGAACTTCTTGAGACGCTTCTTCACTATCTTCTT
GGTCAGCAAAGGAACACCCATTTTTCT
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