FC928891

Overview
NameFC928891
Unique NameFC928891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928891_ssr138 microsatellite FC928891_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9264 contig Ccv1_Contig9264:11..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC928891 vs. ExPASy Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.355e-22
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:  490 KIGARVKVKVPLKVYHVPRVPELDLSGMEGVLKQYVGVWKGKKISANLPYKVAFVTEIEG--RTVKFFAHLKDDEFDYLD 723
            KIG RV+V  PL+VYHV + P+LD+ GMEGV+KQYV VWKGK+++AN P+KV F   +EG  + V+FFAHL++DEF+++D
Sbjct:   17 KIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFELAVEGQPKPVRFFAHLREDEFEFVD 96
[Close]
BLAST of FC928891 vs. ExPASy Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.403e-19
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:  382 ISCEVAVKSNNSTASVGLEXXXXXXXXXXDDGFDESKIGARVKVKVPLKVYHVPRVPELDLS-GMEGVLKQYVGVWKGKKISANLPYKVAFVTEIEGR-TVKFFAHLKDDEFDYL 720
            I CEVA+KS++ST                    +  K+G +VKVK PLKVYHVP++PE++L+  M GV+KQYVG WKGK IS N P+KV +  ++  R +VK   HLK++EF+ +
Sbjct:   60 ICCEVALKSDSSTGFDSSSSSPPEEDEELKKNLE--KVGCKVKVKSPLKVYHVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEEFEII 172
The following BLAST results are available for this feature:
BLAST of FC928891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTRV_MAIZE1.355e-2258.75Ferredoxin-thioredoxin reductase, variable chain O... [more]
FTRV_SPIOL1.403e-1945.22Ferredoxin-thioredoxin reductase, variable chain, ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3BA01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928891 ID=FC928891; Name=FC928891; organism=Citrus clementina; type=EST; length=732bp
GGCACGAGGAGGAGAGGATGTATACGATCTAGAGTGTTATTCATTCGACA
CGTGTGCAATAGAGACGAAAGTCCGTTGCCATCGTCTTAGCTCGCCTTAG
CCACTGAGGCCTGAGATAGTGGTTCAATAGAAAAATCAATAATAATAATA
AAAAAAAGAGTAAAGGTTGGGTAATATCATTATTATTATATGATTATTTT
GTGAGAATTAGCAGACGAGTGAAAAGATAGATACACAGAAATCATGACTA
GTACAAGTTTTGCTTTGTCCTCGGCTACTTCTTCGTTGATAAATCGACGG
CCACTTGCGAATGCGTTTGTCTCAGTTTCTTCATTTTCAGCTGCCAATTG
TAATTACAATGTTAATGTTAACAAAAGAAGAATCTCCTGTGAAGTAGCTG
TAAAATCCAACAATTCAACGGCATCCGTAGGACTAGAGAGCAGTCCATCT
TCATCAGCATCAGCGTCGGATGATGGCTTTGATGAGTCTAAGATTGGTGC
GAGGGTTAAGGTGAAGGTGCCGTTGAAGGTTTACCATGTTCCTAGGGTTC
CGGAGCTTGATCTGTCTGGCATGGAAGGTGTGCTCAAGCAATACGTCGGC
GTTTGGAAAGGAAAGAAAATCTCAGCCAATCTGCCTTATAAGGTAGCGTT
TGTTACTGAAATTGAAGGCCGTACTGTCAAGTTCTTTGCACATCTCAAGG
ATGATGAATTTGATTACCTTGATTAATATTTT
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