FC928916

Overview
NameFC928916
Unique NameFC928916
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length807
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1708 contig Ccv1_Contig1708:557..1363. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC928916 vs. ExPASy Swiss-Prot
Match: GRIP_ARATH (Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.568e-62
Identity = 130/269 (48.33%), Postives = 175/269 (65.06%), Query Frame = 2 
Query:   11 STRDAELMAAKQEIIHLEREFSSYKIRAHALLQKKDAELAAANDTEQLRXXXXXXXXXXXXMSLVSAEKDKALQELQEALANHDKELAERDAALNNANQQIKSIEIKLDSMNTKHQMEKEAWEKNIQTVEESWRLRCELLKAQKEESSGQDVQKELQELKLQYKRLKDEHDSFRDLADRMMEEKDNEISRLLDDNKNLHQSLELRPADNHNDKD----STGITASQKQDVLNSIPSXXXXXXXXXXXXXXXXXXXXXXXXXHILALSEE 805
            ST+DAEL  A++EI  L+ EFSSYKIRAHALLQKKD ELAAA D+EQ++            + LVSAE+D+A Q+LQ ALA+ +KEL ER  AL +A++QIKS+E+KLDS   ++Q EK+AWE++++ +EE+WR RCE L AQ E S  + ++KEL+  KL+ KR+K+EH+S R+LADR++EEKD EISRL+D+  NL +S+E +P  N +           T SQ+QDV N   S                         HILAL EE
Sbjct:  411 STKDAELKGAREEINRLQSEFSSYKIRAHALLQKKDMELAAAKDSEQIKSLEEALKEAEKEVYLVSAERDRAQQDLQSALASLEKELEERAGALKDASEQIKSLEVKLDSTVARNQAEKQAWEEDLRVLEETWRRRCEALTAQNEASPAEGIEKELENAKLRNKRMKEEHESVRELADRLIEEKDREISRLVDEMTNLRKSMESKPVWNKSPSQVHHYGNNNTESQQQDVSNLSTSAAEHQILILARQQAQREEELAQTQRHILALQEE 679
The following BLAST results are available for this feature:
BLAST of FC928916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GRIP_ARATH4.568e-6248.33Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3BB03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928916 ID=FC928916; Name=FC928916; organism=Citrus clementina; type=EST; length=807bp
GGCACGAGGAAGTACTAGAGATGCTGAACTTATGGCTGCCAAACAAGAGA
TTATCCACCTTGAACGTGAATTTTCTTCTTACAAGATTCGTGCTCATGCA
CTTCTCCAGAAAAAGGATGCAGAGCTAGCTGCAGCTAACGACACTGAACA
GCTCAGAGCTCTTGAGGAAGCATTGAAAGAAACTGAAAAAGAAATGTCCC
TGGTTTCTGCAGAAAAAGATAAGGCCCTTCAAGAACTTCAAGAGGCTTTG
GCTAATCATGACAAAGAACTTGCAGAAAGAGATGCAGCTCTGAACAATGC
AAACCAGCAGATAAAGAGCATAGAGATCAAGCTTGATTCTATGAATACTA
AACACCAAATGGAGAAAGAAGCATGGGAAAAGAACATTCAAACTGTGGAA
GAATCATGGCGACTCAGATGTGAGCTATTGAAAGCTCAAAAAGAAGAATC
TTCTGGGCAAGATGTACAAAAAGAATTACAAGAACTCAAACTACAGTATA
AACGTCTAAAGGATGAACATGATTCATTCCGTGATCTTGCTGATAGGATG
ATGGAGGAGAAGGACAATGAAATCTCTAGACTTTTGGATGATAATAAGAA
TCTTCACCAATCTCTGGAATTGAGACCAGCTGACAATCACAATGATAAGG
ACAGCACAGGCATTACAGCCTCACAGAAACAGGATGTTCTGAATTCAATT
CCCTCTGCAGCAGAGCAGCAGATTCTGCTTTTAGCGAGGCAACAAGCACA
GAGAGAGGAGGAGCTAGCACAATCACAGCGGCACATTTTGGCACTTTCAG
AGGAGCT
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