FC928942 | Citrus Genome Database

Overview


Name	FC928942
Unique Name	FC928942
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	626

Libraries


Library Name	Type
PhII-IIIV1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig15018	contig	Ccv1_Contig15018:1..626.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2

Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2

Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2

Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2

Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2

Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2

Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2

Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2

Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2

Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.550e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 2

Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of FC928942 vs. ExPASy Swiss-Prot

BLAST of FC928942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
H4_SILLA	1.550e-39	100.00	Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3	[more]
H4_PEA	1.550e-39	100.00	Histone H4 OS=Pisum sativum PE=1 SV=2	[more]
H4_MAIZE	1.550e-39	100.00	Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2	[more]
H4_LOLTE	1.550e-39	100.00	Histone H4 OS=Lolium temulentum PE=3 SV=2	[more]
H4_FLATR	1.550e-39	100.00	Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3	[more]
H4_EUCGL	1.550e-39	100.00	Histone H4 OS=Eucalyptus globulus PE=3 SV=3	[more]
H4_CHEMJ	1.550e-39	100.00	Histone H4 OS=Chelidonium majus PE=3 SV=3	[more]
H4_ARATH	1.550e-39	100.00	Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE...	[more]
H42_WHEAT	1.550e-39	100.00	Histone H4 variant TH091 OS=Triticum aestivum PE=3...	[more]
H41_WHEAT	1.550e-39	100.00	Histone H4 variant TH011 OS=Triticum aestivum PE=3...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAH3BC09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BC09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC928942 ID=FC928942; Name=FC928942; organism=Citrus clementina; type=EST; length=626bp
GGCACGAGGCAAAAAAGTAAAATTGTCACGAATCACTCTGATTTATTCAT
CAGACACGCAATATCAGAGAAAAATTATGTCGGGGCGTGGGAAGGGAGGC
AAGGGGTTGGGAAAGGGAGGAGCAAAGCGTCACCGTAAGGTTCTTCGCGA
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCGTCGGG
GTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAA
ATGGGAATCTTGGTTTAATTTGTTAATGGTGTTTTCATTTTGTAACGTTA
ATTACCCCTATGATTTTGAGTAGAATTAACGATAGATCGTTGTGAAGCTT
CTTGGTATAAAAAAAAAAAAAAAAAA