FC928947 | Citrus Genome Database

Overview


Name	FC928947
Unique Name	FC928947
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	380

Libraries


Library Name	Type
PhII-IIIV1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig8840	contig	Ccv1_Contig8840:513..892.	BLAST: Citrus Unigene V1 Contigs to SwissProt

Homology

[Close]

BLAST of FC928947 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSJ (Uncharacterized protein ycf68 OS=Oryza sativa subsp. japonica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.352e-15
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = -2

Query:  227 KNGAPNNVFSQTKKYEIAPFISLWGDGGIVPFEPFSFFMLFP 352
            +NGAPNN  SQTK YEI   +S WGDGGIVPFEP  FF  FP
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIVPFEP--FFHAFP 116

HSP 2 Score: 43.8986 bits (102), Expect = 1.352e-15
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = -1

Query:  177 FFHAFPGGLEKGAINRIFLILPS 245
            FFHAFPGGLEK AINR  LILPS
Sbjct:  111 FFHAFPGGLEKAAINRTSLILPS 133

[Close]

BLAST of FC928947 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSI (Uncharacterized protein ycf68 OS=Oryza sativa subsp. indica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.352e-15
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = -2

Query:  227 KNGAPNNVFSQTKKYEIAPFISLWGDGGIVPFEPFSFFMLFP 352
            +NGAPNN  SQTK YEI   +S WGDGGIVPFEP  FF  FP
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIVPFEP--FFHAFP 116

HSP 2 Score: 43.8986 bits (102), Expect = 1.352e-15
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = -1

Query:  177 FFHAFPGGLEKGAINRIFLILPS 245
            FFHAFPGGLEK AINR  LILPS
Sbjct:  111 FFHAFPGGLEKAAINRTSLILPS 133

[Close]

BLAST of FC928947 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSA (Uncharacterized protein ycf68 OS=Oryza sativa GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.352e-15
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = -2

Query:  227 KNGAPNNVFSQTKKYEIAPFISLWGDGGIVPFEPFSFFMLFP 352
            +NGAPNN  SQTK YEI   +S WGDGGIVPFEP  FF  FP
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIVPFEP--FFHAFP 116

HSP 2 Score: 43.8986 bits (102), Expect = 1.352e-15
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = -1

Query:  177 FFHAFPGGLEKGAINRIFLILPS 245
            FFHAFPGGLEK AINR  LILPS
Sbjct:  111 FFHAFPGGLEKAAINRTSLILPS 133

[Close]

BLAST of FC928947 vs. ExPASy Swiss-Prot
Match: YCF68_ORYNI (Uncharacterized protein ycf68 OS=Oryza nivara GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.352e-15
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = -2

Query:  227 KNGAPNNVFSQTKKYEIAPFISLWGDGGIVPFEPFSFFMLFP 352
            +NGAPNN  SQTK YEI   +S WGDGGIVPFEP  FF  FP
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIVPFEP--FFHAFP 116

HSP 2 Score: 43.8986 bits (102), Expect = 1.352e-15
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = -1

Query:  177 FFHAFPGGLEKGAINRIFLILPS 245
            FFHAFPGGLEK AINR  LILPS
Sbjct:  111 FFHAFPGGLEKAAINRTSLILPS 133

[Close]

BLAST of FC928947 vs. ExPASy Swiss-Prot
Match: YCF68_SACOF (Uncharacterized protein ycf68 OS=Saccharum officinarum GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 42.743 bits (99), Expect = 1.368e-15
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = -3

Query:  289 KMEHLTTYFHRPRNTRSPLSF 351
            KMEHLTT+ HRPR TRSPLSF
Sbjct:   80 KMEHLTTHLHRPRTTRSPLSF 100

HSP 2 Score: 42.3578 bits (98), Expect = 1.368e-15
Identity = 19/23 (82.61%), Postives = 19/23 (82.61%), Query Frame = -1

Query:  177 FFHAFPGGLEKGAINRIFLILPS 245
            FFHAFPGGLEK  INR  LILPS
Sbjct:  112 FFHAFPGGLEKAVINRTSLILPS 134

HSP 3 Score: 36.5798 bits (83), Expect = 1.368e-15
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = -2

Query:  227 ISLWGDGGIVPFEPFSFFMLFP 292
            +S WGDGGIVPFEP  FF  FP
Sbjct:   98 LSFWGDGGIVPFEP--FFHAFP 117

[Close]

BLAST of FC928947 vs. ExPASy Swiss-Prot
Match: YCF68_SACHY (Uncharacterized protein ycf68 OS=Saccharum hybrid GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 42.743 bits (99), Expect = 1.368e-15
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = -3

Query:  289 KMEHLTTYFHRPRNTRSPLSF 351
            KMEHLTT+ HRPR TRSPLSF
Sbjct:   80 KMEHLTTHLHRPRTTRSPLSF 100

HSP 2 Score: 42.3578 bits (98), Expect = 1.368e-15
Identity = 19/23 (82.61%), Postives = 19/23 (82.61%), Query Frame = -1

Query:  177 FFHAFPGGLEKGAINRIFLILPS 245
            FFHAFPGGLEK  INR  LILPS
Sbjct:  112 FFHAFPGGLEKAVINRTSLILPS 134

HSP 3 Score: 36.5798 bits (83), Expect = 1.368e-15
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = -2

Query:  227 ISLWGDGGIVPFEPFSFFMLFP 292
            +S WGDGGIVPFEP  FF  FP
Sbjct:   98 LSFWGDGGIVPFEP--FFHAFP 117

[Close]

BLAST of FC928947 vs. ExPASy Swiss-Prot
Match: YCF68_MAIZE (Uncharacterized protein ycf68 OS=Zea mays GN=ycf68 PE=3 SV=2)

HSP 1 Score: 42.743 bits (99), Expect = 1.368e-15
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = -3

Query:  289 KMEHLTTYFHRPRNTRSPLSF 351
            KMEHLTT+ HRPR TRSPLSF
Sbjct:   80 KMEHLTTHLHRPRTTRSPLSF 100

HSP 2 Score: 42.3578 bits (98), Expect = 1.368e-15
Identity = 19/23 (82.61%), Postives = 19/23 (82.61%), Query Frame = -1

Query:  177 FFHAFPGGLEKGAINRIFLILPS 245
            FFHAFPGGLEK  INR  LILPS
Sbjct:  112 FFHAFPGGLEKAVINRTSLILPS 134

HSP 3 Score: 36.5798 bits (83), Expect = 1.368e-15
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = -2

Query:  227 ISLWGDGGIVPFEPFSFFMLFP 292
            +S WGDGGIVPFEP  FF  FP
Sbjct:   98 LSFWGDGGIVPFEP--FFHAFP 117

The following BLAST results are available for this feature:

BLAST of FC928947 vs. ExPASy Swiss-Prot

BLAST of FC928947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7


Match Name	E-value	Identity	Description
YCF68_ORYSJ	1.352e-15	69.05	Uncharacterized protein ycf68 OS=Oryza sativa subs...	[more]
YCF68_ORYSI	1.352e-15	69.05	Uncharacterized protein ycf68 OS=Oryza sativa subs...	[more]
YCF68_ORYSA	1.352e-15	69.05	Uncharacterized protein ycf68 OS=Oryza sativa GN=y...	[more]
YCF68_ORYNI	1.352e-15	69.05	Uncharacterized protein ycf68 OS=Oryza nivara GN=y...	[more]
YCF68_SACOF	1.368e-15	85.71	Uncharacterized protein ycf68 OS=Saccharum officin...	[more]
YCF68_SACHY	1.368e-15	85.71	Uncharacterized protein ycf68 OS=Saccharum hybrid ...	[more]
YCF68_MAIZE	1.368e-15	85.71	Uncharacterized protein ycf68 OS=Zea mays GN=ycf68...	[more]

Properties


Property Name	Value
Genbank description	KN0AAH1CG04RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CG04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC928947 ID=FC928947; Name=FC928947; organism=Citrus clementina; type=EST; length=380bp
GAGATAGATAAATAGACACATCCCATTGCACCGCTCGGGGGCGTTCGTAC
TGACTGAGGGGGTCCAAAACCAAAAACTGAGTTATTTATCATCCAAGCAT
TCTTCTTACGGCTAGATCCAATCTCCTGGTCCCTGCGGAAAGGAAAAGGA
AAAAGAATTTCACGTTCTTCCTTTCGGGAAGGGAGGATTAGGAAAATCCT
ATTGATTGCACCTTTCTCCAGACCTCCGGGAAAAGCATGAAAAAAGAAAA
AGGCTCGAATGGTACAATCCCTCCGTCACCCCATAATGAAATGAAAGGGG
CGATCTCGTATTTCTTGGTCTGTGAAAATACGTTGTTAGGTGCTCCATTT
TTTTTCACATTGAGGCCAAACCTAAGACTG