FC928957

Overview
NameFC928957
Unique NameFC928957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14096 contig Ccv1_Contig14096:754..1388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928957 vs. ExPASy Swiss-Prot
Match: PROD_ARATH (Proline dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=POX PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.651e-68
Identity = 127/214 (59.35%), Postives = 172/214 (80.37%), Query Frame = 2
Query:    2 REPSFNLP*KLNNFPLFSDCNPLDHTLQKPEPLTLQEKNELQSAQQRLQKLCQECLEANVPLTVNAEDTFVQPAIDYLTYNAALS-NNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSG-AVVLATHNVESGQLAAAKATDLGI-KGDQKLEFAQL 634
            + P+F L  KL +FP+FS+ +PL HT  +PEPLT +E+ EL++A  R+Q++C++C E+NVPL ++AEDT +QPAIDY+ Y++A+  N    +PIVYNTIQAYL+DA ERL LA + AEK  VPMGFKLVRGAYMSSE+ LA SLG  SP+H++IQ+TH+CYNDC ++++EK ++GSG  VVLATHN +SG+LA+ KA+DLGI K + K+EFAQL
Sbjct:  218 KSPNFKLSWKLKSFPVFSESSPLYHTNSEPEPLTAEEERELEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAYSSAIMFNADKDRPIVYNTIQAYLRDAGERLHLAVQNAEKENVPMGFKLVRGAYMSSEASLADSLGCKSPVHDTIQDTHSCYNDCMTFLMEKASNGSGFGVVLATHNADSGRLASRKASDLGIDKQNGKIEFAQL 431          
BLAST of FC928957 vs. ExPASy Swiss-Prot
Match: PROD_HUMAN (Proline dehydrogenase, mitochondrial OS=Homo sapiens GN=PRODH PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.716e-25
Identity = 71/187 (37.97%), Postives = 110/187 (58.82%), Query Frame = 2
Query:   92 EPLTLQ--EKNELQSAQ--QRLQKLCQECLEANVPLTVNAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA-VVLATHNVESGQLAAAKATDLGI-KGDQKLEFAQL 634
            EPL  +  E+ ELQ  +  QR+  L ++  E  V L V+AE T+ QPAI  LT       N   KP+++NT Q YLKDA + + L  E A + G   G KLVRGAY++ E   AA +G++ PI+ + + T+A Y+ C  Y+LE++   + A V++A+HN ++ + A  +  +LG+   D ++ F QL
Sbjct:  258 EPLLSRFTEEEELQMTRMLQRMDVLAKKATEMGVRLMVDAEQTYFQPAISRLTLEMQRKFN-VEKPLIFNTYQCYLKDAYDNVTLDVELARREGWCFGAKLVRGAYLAQERARAAEIGYEDPINPTYEATNAMYHRCLDYVLEELKHNAKAKVMVASHNEDTVRFALRRMEELGLHPADHQVYFGQL 443          
BLAST of FC928957 vs. ExPASy Swiss-Prot
Match: PROD_MOUSE (Proline dehydrogenase, mitochondrial OS=Mus musculus GN=Prodh PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.414e-24
Identity = 66/187 (35.29%), Postives = 108/187 (57.75%), Query Frame = 2
Query:   92 EPL----TLQEKNELQSAQQRLQKLCQECLEANVPLTVNAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA-VVLATHNVESGQLAAAKATDLGI-KGDQKLEFAQL 634
            EPL    T +E+ +++   QR+  L ++  EA V L ++AE ++ QPAI  LT       N   KP ++NT Q YLKDA + + L  E A + G   G KLVR AYM+ E   AA +G++ PI+ + + T+A Y+ C +Y+LE++   + A V++A+HN ++      +  ++G+   D ++ F QL
Sbjct:  239 EPLLSRFTEEEEQQMKRMLQRMDVLAKKAKEAGVRLMIDAEQSYFQPAISRLTLEMQRRFN-VDKPFIFNTFQCYLKDAYDNVTLDMELARREGWCSGAKLVRRAYMAQERVRAAEIGYEDPINPTYEATNAMYHRCLNYVLEELKHSTKAEVMVASHNEDTVHFTLCRMKEIGLHPADGQVCFGQL 424          
BLAST of FC928957 vs. ExPASy Swiss-Prot
Match: PROD_DICDI (Proline dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=prodh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 64/195 (32.82%), Postives = 108/195 (55.38%), Query Frame = 2
Query:   17 NLP*KLNNFPLFSDCNPLDHTL--------QKPEPL-TLQEKNELQSAQQRLQKLCQECLEANVPLTVNAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERL--FLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGAV--VLATHNVES 562
            N+   ++  P+ S  +PLD  L        Q  EPL T ++  E++    R+ K+ Q C +  VP+ V+AE ++ Q AI +LT + ++  NK  KPI+YNT Q YL +    L       +++K    +G K+VRGAYM +ES+ +  L  ++P+  +IQ+TH  YN    ++L +I     ++  ++A+HN +S
Sbjct:  289 NVTTNVSELPIESFNSPLDFYLNQSSSLMKQGSEPLLTSKDIKEIKEFFNRMDKIFQLCHQRGVPILVDAEQSYYQVAIHHLTMSYSIKYNKE-KPIIYNTYQMYLVNGMNVLKQHFELSSSQKFNFKLGAKIVRGAYMVTESERSQRLSTENPVLPTIQDTHKSYNTALDFLLNQIKSDPNSIGLMIASHNEDS 482          
BLAST of FC928957 vs. ExPASy Swiss-Prot
Match: PROD2_BOVIN (Probable proline dehydrogenase 2 OS=Bos taurus GN=PRODH2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 64/183 (34.97%), Postives = 96/183 (52.46%), Query Frame = 2
Query:   98 LTLQEKNELQSAQQRLQKLCQECLEANVPLTVNAEDTFVQPAIDYLTYNAALSNNKAGK--PIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA--VVLATHNVESGQLAAAKATDLGIKGDQKLEFAQL 634
            L  ++   LQ++  RL ++ Q      V L V+AE T + PA+  L    A   N +G+  P V+NT QAYLKD  ERL    EAA++ G+  G KLVRGAY+  E + A   G + P     + T   Y+ C   ML +++       +++A+HN +S + A  +  +LGI  D  + F QL
Sbjct:  206 LNTEQTRHLQASLSRLHRVVQHARAQRVRLLVDAEYTSLNPALSLLVAALATRWNSSGEGGPWVWNTYQAYLKDTYERLRWDAEAADRAGLAFGVKLVRGAYLDKERETARLQGTEDPTQPDYEATSQSYSRCLELMLTQVSHRGPMCHLMVASHNEDSVRQATKRMWELGIPPDGPVCFGQL 388          
BLAST of FC928957 vs. ExPASy Swiss-Prot
Match: PROD2_MOUSE (Probable proline dehydrogenase 2 OS=Mus musculus GN=Prodh2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.170e-20
Identity = 64/183 (34.97%), Postives = 95/183 (51.91%), Query Frame = 2
Query:   98 LTLQEKNELQSAQQRLQKLCQECLEANVPLTVNAEDTFVQPAIDYLTYNAALSNN--KAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA--VVLATHNVESGQLAAAKATDLGIKGDQKLEFAQL 634
            L+ ++   LQ++  RL ++ Q      V L V+AE TF+ PA+  L    A+  N  + G P V+NT QAYLKD  +RL    EAA K G+  G KLVRGAY+  E  +    G +       + T   Y+ C   ML  +++      +++A+HN ES + A  +  +LGI  D  + F QL
Sbjct:  206 LSTEQNQHLQASLSRLHRVAQHARAKCVRLLVDAEYTFINPALSLLVAALAVRWNSPEEGGPWVWNTYQAYLKDTHQRLEQDAEAAHKAGLAFGVKLVRGAYLDKERSMTQLQGKEDCTQPDYEATSRSYSRCLELMLRCVSNHGPPCHLMVASHNEESVRQATKRMWELGIPLDGPVCFGQL 388          
BLAST of FC928957 vs. ExPASy Swiss-Prot
Match: PROD2_XENLA (Probable proline dehydrogenase 2 OS=Xenopus laevis GN=prodh2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 60/178 (33.71%), Postives = 95/178 (53.37%), Query Frame = 2
Query:  110 EKNELQSAQQRLQKLCQECLEANVPLTVNAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA--VVLATHNVESGQLAAAKATDLGI-KGDQKLEFAQL 634
            E + L+++ +RL ++ +      V + V+AE T++ PA+  +T  A +S     +P ++NT Q YLKD+   L L  + A  +G+  G KLVRGAYM  E KL+   G+  PI +  + T+  Y      ML+ I        +++A+HN ES   A  +  +LGI KG   + F QL
Sbjct:  223 ENSHLRNSVRRLSRIAKHATANRVRVLVDAEYTYMNPALSLVTM-AMMSQCNQSEPWIWNTYQCYLKDSFSLLSLDLDTARSLGLCFGVKLVRGAYMDKERKLSKQKGYADPIQHDWEATNRSYQRSLDKMLDLIGQNGQRHNLIVASHNEESVLHAVTRMAELGIDKGSGSVSFGQL 399          
BLAST of FC928957 vs. ExPASy Swiss-Prot
Match: PROD2_RAT (Probable proline dehydrogenase 2 OS=Rattus norvegicus GN=Prodh2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.835e-20
Identity = 62/183 (33.88%), Postives = 97/183 (53.01%), Query Frame = 2
Query:   98 LTLQEKNELQSAQQRLQKLCQECLEANVPLTVNAEDTFVQPAIDYLTYNAA--LSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA--VVLATHNVESGQLAAAKATDLGIKGDQKLEFAQL 634
            L+ ++   LQ++  RL ++ Q     +V L V+AE TF+ PA+  L    A  L +++   P V+NT QAYLKD  ERL    +AA + G+  G KLVRGAY+  E  +    G +       + T   Y+ C   ML ++++      +++A+HN ES + A  +  +LGI  D  + F QL
Sbjct:  206 LSTEQNQHLQASLSRLHRVAQHARAQDVRLLVDAEYTFINPALSLLVAALAMRLDSSEEEGPWVWNTYQAYLKDTHERLERDAKAAHEAGLAFGVKLVRGAYLDKERSVTQLHGKEDCTQPDYEATSRSYSRCLELMLRRVSNHGPRCHLMVASHNEESIRQATRRMWELGIPLDGPVCFGQL 388          
BLAST of FC928957 vs. ExPASy Swiss-Prot
Match: PROD2_HUMAN (Probable proline dehydrogenase 2 OS=Homo sapiens GN=PRODH2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 64/183 (34.97%), Postives = 94/183 (51.37%), Query Frame = 2
Query:   98 LTLQEKNELQSAQQRLQKLCQECLEANVPLTVNAEDTFVQPAIDYLTYNAALSNNKAGK--PIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKIADGSGA--VVLATHNVESGQLAAAKATDLGIKGDQKLEFAQL 634
            L  ++   L+++  RL ++ Q     +V L V+AE T + PA+  L    A+  N  G+  P V+NT QA LKD  ERL    EAA + G+  G KLVRGAY+  E  +A   G + P     + T   Y+ C   ML  +A       +++A+HN ES + A  +  +LGI  D  + F QL
Sbjct:  282 LNAEQNQHLRASLSRLHRVAQYARAQHVRLLVDAEYTSLNPALSLLVAALAVRWNSPGEGGPWVWNTYQACLKDTFERLGRDAEAAHRAGLAFGVKLVRGAYLDKERAVAQLHGMEDPTQPDYEATSQSYSRCLELMLTHVARHGPMCHLMVASHNEESVRQATKRMWELGIPLDGTVCFGQL 464          
BLAST of FC928957 vs. ExPASy Swiss-Prot
Match: PROD_CAEEL (Proline dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0513.5 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 49/162 (30.25%), Postives = 91/162 (56.17%), Query Frame = 2
Query:   98 LTLQEKNELQSAQQRLQKLCQECLEANVPLTVNAEDTFVQPAIDYLTYNAALSNNKAGKPIVYNTIQAYLKDAKERLFLATEAAEKMGVPMGFKLVRGAYMSSESKLAASLGFDSPIHNSIQETHACYNDCASYMLEKI---ADGSGAVVLATHNVESGQLA 574
            L+ +E+ E ++  +R   + +  +E  V + V+AE T++QPAI  +T       NK G+  ++NT QAYLK   + +    + A + G   G KLVRGAYM  E   A ++G++ PI+++ + T   Y  C + + +++      + +V++A+HN ++ + A
Sbjct:  359 LSNEEEQEFRNMVRRTLDVAEYAIEKGVRIMVDAEQTYLQPAISKITIEMMKKYNK-GRGNIFNTYQAYLKGTLQNMEADMQVARREGWHFGAKLVRGAYMEQERARAKAIGYEDPINDNFEATSKMYESCLTRIADEVHRRGKTNVSVMVASHNEDTVRFA 519          
The following BLAST results are available for this feature:
BLAST of FC928957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PROD_ARATH3.651e-6859.35Proline dehydrogenase, mitochondrial OS=Arabidopsi... [more]
PROD_HUMAN1.716e-2537.97Proline dehydrogenase, mitochondrial OS=Homo sapie... [more]
PROD_MOUSE9.414e-2435.29Proline dehydrogenase, mitochondrial OS=Mus muscul... [more]
PROD_DICDI4.373e-2132.82Proline dehydrogenase, mitochondrial OS=Dictyostel... [more]
PROD2_BOVIN4.373e-2134.97Probable proline dehydrogenase 2 OS=Bos taurus GN=... [more]
PROD2_MOUSE2.170e-2034.97Probable proline dehydrogenase 2 OS=Mus musculus G... [more]
PROD2_XENLA2.834e-2033.71Probable proline dehydrogenase 2 OS=Xenopus laevis... [more]
PROD2_RAT4.835e-2033.88Probable proline dehydrogenase 2 OS=Rattus norvegi... [more]
PROD2_HUMAN1.407e-1934.97Probable proline dehydrogenase 2 OS=Homo sapiens G... [more]
PROD_CAEEL1.720e-1730.25Proline dehydrogenase, mitochondrial OS=Caenorhabd... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BD03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928957 ID=FC928957; Name=FC928957; organism=Citrus clementina; type=EST; length=635bp
AAGAGAGCCTTCATTTAATCTCCCGTGAAAGCTCAACAACTTCCCTCTTT
TCTCGGATTGCAACCCCTTAGATCACACGTTGCAAAAACCTGAACCGTTG
ACATTACAAGAAAAAAATGAGCTCCAATCAGCCCAGCAAAGGCTACAAAA
GTTGTGCCAAGAATGCTTAGAGGCCAATGTGCCACTAACAGTCAATGCCG
AGGACACATTTGTGCAGCCTGCTATTGATTACTTGACATACAACGCAGCA
CTCTCGAACAACAAAGCCGGTAAGCCGATCGTGTACAACACAATTCAGGC
TTACTTGAAGGATGCCAAGGAAAGATTGTTTCTTGCAACAGAAGCTGCTG
AGAAAATGGGAGTGCCTATGGGGTTTAAGCTTGTCAGGGGAGCTTATATG
TCTAGTGAAAGTAAACTAGCTGCGTCCTTGGGATTTGACTCTCCTATTCA
CAATAGCATTCAAGAGACTCATGCCTGTTACAACGATTGTGCTTCTTACA
TGCTGGAGAAGATTGCTGACGGCTCCGGTGCTGTTGTTCTTGCTACCCAT
AATGTGGAATCAGGGCAACTAGCCGCAGCAAAGGCGACTGATCTGGGGAT
CAAAGGGGACCAGAAGCTGGAATTTGCACAGCTTT
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