FC929004

Overview
NameFC929004
Unique NameFC929004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.488e-53
Identity = 104/133 (78.20%), Postives = 112/133 (84.21%), Query Frame = -3
Query:  248 MAVRLLTXXXXXXXXXXXXRPQGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 646
            MAV LLT            RPQ DR+I+VKE+WRRPKGID RVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYCAEIAHNVSTKKRK IVER +QL VVVTN+LARLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.206e-52
Identity = 101/133 (75.94%), Postives = 111/133 (83.46%), Query Frame = -3
Query:  248 MAVRLLTXXXXXXXXXXXXRPQGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 646
            MAV LLT            RPQ DR+I+VKE+WRRPKGID RVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKF+VHN +ELELLMMHNRTYCAEIAHN+STKKRK IVER +QL VVV+NKL RLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40
Identity = 77/112 (68.75%), Postives = 95/112 (84.82%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR + +K NWR+P+GID RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVER AQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40
Identity = 77/112 (68.75%), Postives = 95/112 (84.82%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR + +K NWR+P+GID RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVER AQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40
Identity = 77/112 (68.75%), Postives = 95/112 (84.82%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR + +K NWR+P+GID RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVER AQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40
Identity = 77/112 (68.75%), Postives = 95/112 (84.82%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR + +K NWR+P+GID RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVER AQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40
Identity = 77/112 (68.75%), Postives = 95/112 (84.82%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR + +K NWR+P+GID RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVER AQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.658e-40
Identity = 76/112 (67.86%), Postives = 95/112 (84.82%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR + +K NWR+P+GID RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVER AQL + +TN  ARLRS+E E
Sbjct:   24 QSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.823e-40
Identity = 80/112 (71.43%), Postives = 90/112 (80.36%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR   +K NWR+P+GID RVRR+FKG  LMPNIGYGS+KKTRH LPNGF+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVER  QL + VTN  ARLRSQE E
Sbjct:   23 QSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134          
BLAST of FC929004 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.833e-39
Identity = 76/112 (67.86%), Postives = 93/112 (83.04%), Query Frame = -3
Query:  248 QGDRKISVKENWRRPKGID*RVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERGAQLVVVVTNKLARLRSQEEE 583
            Q DR + ++ NWR+P+GID RVR  FKG +LMPNIGYGS+KKT+H LP+GFKKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVER AQL + VTN  ARLRS+E E
Sbjct:   24 QSDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135          
The following BLAST results are available for this feature:
BLAST of FC929004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RL321_ARATH6.488e-5378.2060S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH4.206e-5275.9460S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_RAT1.269e-4068.7560S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG1.269e-4068.7560S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE1.269e-4068.7560S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA1.269e-4068.7560S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN1.269e-4068.7560S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_BOVIN1.658e-4067.8660S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_SPOFR4.823e-4071.4360S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_ICTPU1.833e-3967.8660S ribosomal protein L32 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BG12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929004 ID=FC929004|Name=FC929004|organism=Citrus clementina|type=EST|length=684bp
TTTTTTTTTTTTTTTTTATGGCATAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAACTTGACATAACATTAATCATGCTCCACAA
AAGACAACAAATTCAAAATATCATTCAGGTGACAAATACAAAATACGTCA
CAATTCACCCCTGGAAATGTTCATCCATTCCAAAAACAACCTAGGAAACA
TTTGGCCAAAAGCCAACACTAACACAAAATATAGAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACAACCA
ATTGTGCACCACGCTCGACAATCTCCTTTCTCTTCTTGGTGGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAATAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAAATAGT
GGCGTGTTTTCTTGTCCGAGCCGTAACCAATATTGGGCATCAAAACACAT
CCTTTGAACTTTCTCCTGACACGTCAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACCCTGGGGCCTCTTGAACTTCT
TGAAACGCTTCTTCACTATCTTCTTGGTCAGCAAACGAACAGCCATTTTT
TCTAAAACGATGAACCGCGGGCTAACTGCCCCCA
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