FC929010

Overview
NameFC929010
Unique NameFC929010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929010_ssr44 microsatellite FC929010_ssr44:44..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9283 contig Ccv1_Contig9283:4..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929010 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.827e-61
Identity = 116/172 (67.44%), Postives = 132/172 (76.74%), Query Frame = 1
Query:  169 KKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 684
            K  LQ+YL QLQQHPLRTKAITAGVLS +SD+V+QKL+GI           V+F   +LGP  HF H  LDK FKGKKDT TVAKKV+LEQLT SP N+L+FMIYYGVV+E  PW  V+ +IKK YPTVQ T+WTF+PVVGWIN+ YVPL FRVI HSLVA  WGIFL LRA
Sbjct:    8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRA 179          
BLAST of FC929010 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.022e-21
Identity = 60/172 (34.88%), Postives = 98/172 (56.98%), Query Frame = 1
Query:  187 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEGRPWRDVKTKIKKD-YPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRALPK 693
            Y+ +L+  P++TKA+T+  LS IS +VAQK                ++G     P  H+ H+ILD++FK  KD      K++++QL  +P+ N+ F   Y V  +++G+P + +  K+  D +PT++  SW  WP+   IN  +VP   RV+F +LV  CWGI+L++ A  K
Sbjct:   17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLIS-SPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAF---YSVLAILDGKP-KSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILATKK 182          
BLAST of FC929010 vs. ExPASy Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.152e-17
Identity = 52/185 (28.11%), Postives = 99/185 (53.51%), Query Frame = 1
Query:  133 RRNFSEEMGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKL-----TGIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 672
            R     E+GS+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ +                   +++G    GP  H+L+L ++     +   ++V K+++L++L  +P   L+F      ++EG+       K++  +      +W  W  + +IN  YVPLQFRV+F ++ A+ W  +L
Sbjct:    7 RLRVESELGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASV-KRLLLDRLFFAPTFLLLFFFVMN-LLEGKNVSVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189          
BLAST of FC929010 vs. ExPASy Swiss-Prot
Match: PXMP2_BOVIN (Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.515e-15
Identity = 51/181 (28.18%), Postives = 97/181 (53.59%), Query Frame = 1
Query:  154 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIXXXXXXXXXXXV-------LFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP-WNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 672
            +G + ++ L QYL  L+ +P+ TKA T+G+LSA+ + +AQ +              V       ++G  + GP  HF +L++++    +   + + K+++L++L  +P + +L F++     +EG+       K+K  +      +W  W  V +IN  Y+P+QFRV+F +LVA+ W  +L
Sbjct:   14 LGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGI-KRLLLDRLLFAPAFLSLFFLVMN--FLEGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYL 191          
BLAST of FC929010 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.515e-15
Identity = 54/172 (31.40%), Postives = 82/172 (47.67%), Query Frame = 1
Query:  169 KKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT----GIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 672
            K     YL QL ++P+ TKA+T+G L  ISD + Q +                   +FG A  GP  H+    LDK F  KK       K+ ++Q+  SP  N +F    G++ EG+   D+  K+KKD+ T   +    WP + ++N  Y+    RV F ++  + WG FL
Sbjct:    9 KLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFP-KKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGIL-EGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178          
BLAST of FC929010 vs. ExPASy Swiss-Prot
Match: PXMP2_RAT (Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.585e-15
Identity = 51/185 (27.57%), Postives = 97/185 (52.43%), Query Frame = 1
Query:  133 RRNFSEEMGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKL-----TGIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 672
            R     E+ S+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ +                   +++G    GP  H+L+L ++     +   + V K+++L++L  +P   L+F      ++EG+       K++  +      +W  W  + +IN  YVPLQFRV+F ++ A+ W  +L
Sbjct:    7 RLRVESELRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAPTFLLLFFFVMN-LLEGKNISVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189          
BLAST of FC929010 vs. ExPASy Swiss-Prot
Match: PXMP2_HUMAN (Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.086e-13
Identity = 46/179 (25.70%), Postives = 92/179 (51.40%), Query Frame = 1
Query:  154 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQ------KLTGIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFL 672
            +G++ ++ L QYL+ L+ +P+ TKA T+G+LSA+ + +AQ      K                ++G  + GP  HF +  ++     +   + + ++++L++L  +P   ++F +     +EG+       K++  +      +W  W  + +IN  YVPL+FRV+F +L A+ W  +L
Sbjct:   14 LGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGL-RRLLLDRLVFAPAFLMLFFLIMN-FLEGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYL 190          
BLAST of FC929010 vs. ExPASy Swiss-Prot
Match: MPV17_RAT (Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.418e-13
Identity = 49/169 (28.99%), Postives = 81/169 (47.93%), Query Frame = 1
Query:  187 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 684
            Y   L  HP + + +TAG L  + DI++Q+L    G+              GC ++GP     + +LD +  G    + + KK++L+Q   +P     F+   GV+  G   +D   K+K+DYP    T++  WP V   N   VPL +R+     VA+ W  +L+ +A
Sbjct:    7 YQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVGPVVGGWYRVLDHLIPGTTKVNAL-KKMLLDQGGFAPCFLGCFLPLVGVL-NGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNSYLSWKA 173          
BLAST of FC929010 vs. ExPASy Swiss-Prot
Match: MPV17_MOUSE (Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.852e-13
Identity = 48/169 (28.40%), Postives = 81/169 (47.93%), Query Frame = 1
Query:  187 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 684
            Y   L  HP + + +TAG L  + D+++Q+L    G+           V  GC ++GP     + +LD +  G      + KK++L+Q   +P     F+   G++  G   +D   K+K+DYP    T++  WP V   N   VPL +R+     VA+ W  +L+ +A
Sbjct:    7 YQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVGPVVGGWYKVLDHLIPGTTKVHAL-KKMLLDQGGFAPCFLGCFLPLVGIL-NGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKA 173          
BLAST of FC929010 vs. ExPASy Swiss-Prot
Match: MPV17_HUMAN (Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 48/169 (28.40%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  187 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIXXXXXXXXXXXVLFGCAYLGPFRHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTSWTFWPVVGWINHLYVPLQFRVIFHSLVAMCWGIFLNLRA 684
            Y   L  HP + + +TAG L  + DI++Q+L    G+           V  GC ++GP     + +LD+   G      + KK++L+Q   +P     F+   G +  G   +D   K+++DYP    T++  WP V   N   VPL +R+     VA+ W  +L+ +A
Sbjct:    7 YQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKVDAL-KKMLLDQGGFAPCFLGCFLPLVGAL-NGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKA 173          
The following BLAST results are available for this feature:
BLAST of FC929010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PMP22_ARATH1.827e-6167.44Peroxisomal membrane protein PMP22 OS=Arabidopsis ... [more]
PX24C_DICDI7.022e-2134.88PXMP2/4 family protein 3 OS=Dictyostelium discoide... [more]
PXMP2_MOUSE6.152e-1728.11Peroxisomal membrane protein 2 OS=Mus musculus GN=... [more]
PXMP2_BOVIN1.515e-1528.18Peroxisomal membrane protein 2 OS=Bos taurus GN=PX... [more]
PX24D_DICDI1.515e-1531.40PXMP2/4 family protein 4 OS=Dictyostelium discoide... [more]
PXMP2_RAT2.585e-1527.57Peroxisomal membrane protein 2 OS=Rattus norvegicu... [more]
PXMP2_HUMAN1.086e-1325.70Peroxisomal membrane protein 2 OS=Homo sapiens GN=... [more]
MPV17_RAT1.418e-1328.99Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 S... [more]
MPV17_MOUSE1.852e-1328.40Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1[more]
MPV17_HUMAN5.389e-1328.40Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BH08RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929010 ID=FC929010; Name=FC929010; organism=Citrus clementina; type=EST; length=828bp
TTGCAAGCAGCACAAAGTACAAGTTAAAGCAAGTCCCTTACCCTTATTAT
TATTATTATTATTATAATTATTATTCTCCCCATTTCCATTTCCTTCTCCA
TCTTTAAAATTGCAAGAAGAAGAACAGAAGGAAGAAGAAATTTTAGTGAG
GAAATGGGATCAATTGCAAAGAAAGGTTTGCAACAGTACTTGATACAACT
TCAGCAACACCCTTTGAGAACAAAGGCAATAACTGCGGGAGTGTTGTCAG
CAATCAGCGACATAGTTGCTCAGAAACTCACTGGCATTCAGAAACTTCAG
CTGAGGAGGCTACTTCTTAAAGTGCTTTTTGGATGTGCTTATCTTGGACC
GTTCAGACATTTCCTGCATTTAATCCTGGATAAAATTTTCAAGGGGAAAA
AAGATACCAGTACAGTTGCCAAGAAGGTGGTGTTGGAACAGTTGACATCT
TCTCCTTGGAACAACTTGATGTTTATGATTTACTATGGGGTTGTTGTTGA
AGGAAGACCTTGGAGGGATGTGAAAACTAAAATCAAGAAGGACTACCCGA
CAGTGCAGTATACATCATGGACGTTCTGGCCAGTTGTGGGGTGGATAAAT
CATCTATATGTACCACTGCAGTTCCGTGTGATTTTCCACAGCTTAGTTGC
AATGTGTTGGGGGATATTTCTGAATCTTCGGGCTTTGCCTAAAGCTAAGT
GACTTGAAAATATAAATATGCACGTCAGTGTAGTAATGCTTGTTACTCTA
TGCACATTTTTTATGTAGCTCAAAGTATATTTCGGGCAGCCAAGAATACT
AATGTGATTATTTCTCTATTTTTCTGAA
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