FC929015

Overview
NameFC929015
Unique NameFC929015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15024 contig Ccv1_Contig15024:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.345e-78
Identity = 144/168 (85.71%), Postives = 152/168 (90.48%), Query Frame = -1 
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYG+PNLKSVKELIYKRGYGKLN QRIALTDNSI+EQALG+HGIIC ED IHEILTVGPHFKEANNFLWPF           KRN YVEGGDAGNRE++INELIRRMN
Sbjct:   75 FYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242
[Close]
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.062e-78
Identity = 142/168 (84.52%), Postives = 153/168 (91.07%), Query Frame = -1 
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVKELIYKRGYGKLN QRIALTDNSI++QALG+HGIIC+ED IHEI+TVGPHFKEANNFLWPF           KRN YVEGGDAGNRE++INEL+RRMN
Sbjct:   75 FYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242
[Close]
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.542e-77
Identity = 139/168 (82.74%), Postives = 151/168 (89.88%), Query Frame = -1 
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVKELIYKRG+GKLN QR ALTDNSI++Q LG+HGIIC+ED IHEI+TVGPHFKEANNFLWPF           KRN YVEGGDAGNRE++INEL+RRMN
Sbjct:   77 FYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244
[Close]
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.746e-63
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = -1 
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMED IHEI TVG  FKEANNFLWPF           K   +VEGGDAGNRED IN LIRRMN
Sbjct:   80 FYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247
[Close]
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.746e-63
Identity = 118/168 (70.24%), Postives = 134/168 (79.76%), Query Frame = -1 
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS+I ++LG+ GIICMED IHEI TVG  FKEANNFLWPF           K   +VEGGDAGNRED IN LIRRMN
Sbjct:  103 FYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 270
[Close]
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.746e-63
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = -1 
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMED IHEI TVG  FKEANNFLWPF           K   +VEGGDAGNRED IN LIRRMN
Sbjct:   80 FYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247
[Close]
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.746e-63
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = -1 
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMED IHEI TVG  FKEANNFLWPF           K   +VEGGDAGNRED IN LIRRMN
Sbjct:   81 FYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248
[Close]
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.746e-63
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = -1 
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMED IHEI TVG  FKEANNFLWPF           K   +VEGGDAGNRED IN LIRRMN
Sbjct:   81 FYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248
[Close]
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 8.096e-63
Identity = 117/168 (69.64%), Postives = 134/168 (79.76%), Query Frame = -1 
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS++ ++LG+ GIICMED IHEI TVG  FKEANNFLWPF           K   +VEGGDAGNRED IN LIRRMN
Sbjct:   93 FYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 260
[Close]
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.879e-60
Identity = 114/168 (67.86%), Postives = 132/168 (78.57%), Query Frame = -1 
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            +YV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV +LIYKRGYGK+NK+RIALTDNS+I + LG+ GIICMED IHEI TVG +FK  NNFLWPF           K   +VEGGDAGNRED IN LIRRMN
Sbjct:   79 YYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVHDLIYKRGYGKINKKRIALTDNSLIRKRLGKLGIICMEDVIHEIYTVGKNFKVVNNFLWPFKLSSPRGGMKKKTIHFVEGGDAGNREDQINRLIRRMN 246
The following BLAST results are available for this feature:
BLAST of FC929015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL72_ARATH2.345e-7885.7160S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL73_ARATH3.062e-7884.5260S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL74_ARATH7.542e-7782.7460S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL7_PONAB4.746e-6369.6460S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MOUSE4.746e-6370.2460S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_MACFA4.746e-6369.6460S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN4.746e-6369.6460S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN4.746e-6369.6460S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT8.096e-6369.6460S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_CHICK2.879e-6067.8660S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DA05RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929015 ID=FC929015; Name=FC929015; organism=Citrus clementina; type=EST; length=744bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGAAAACAAAAAA
TAAAATTTGGAATGATAATCCAGTCTGAAGCCAAAATAACAACACTGTCA
CTGTTATAAAAAGTAAAAAAGTTTCTACTTAACTTCCAGGGAAAAGGCTG
GGAATAATAGGAAACACTAAAAGCCAAAATTTAAAATATTGATCACATCA
AAACTTCTTCAAAAGGGGTAGGATATTCTGCAAAAGCCTAGTTCATCCTT
CTGATGAGCTCATTGATGTAATCTTCACGGTTTCCTGCATCACCGCCTTC
AACATAGGGGTTCCTCTTCTTCTTCAGGCCACCCAATGGGGCCTTGAGCT
TGAAGGGCCATAGGAAGTTGTTTGCCTCCTTGAAGTGAGGACCAACAGTC
AAAATCTCATGGATGAAATCTTCCATGCAAATAATTCCATGCTGCCCAAG
AGCCTGTTCGATGATAGAATTGTCGGTCAAAGCAATCCTCTGCTTATTTA
ATTTGCCGTAACCCCTCTTGTAAATCAGTTCTTTGACACTCTTTAAATTG
GGGTACCCATATGTTACATAGGGCTCAACTCTGTGCAGCATATTGAGTGT
GGCTTTGTTCACTTTCAAAAAGACACCATTAAAAATCTGTCTCAAACGGA
GAAGCTGCAAAATTTTCTTGGTCTTTGGATCAACAGCATTGATACCGCGA
ATCCTGATAATGAACAAAAGCTTAGCTTCTGGGTTGACATAAAA
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