FC929048

Overview
NameFC929048
Unique NameFC929048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15013 contig Ccv1_Contig15013:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929048 vs. ExPASy Swiss-Prot
Match: MYG1_HUMAN (UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.105e-41
Identity = 98/259 (37.84%), Postives = 137/259 (52.90%), Query Frame = 3
Query:  147 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSR------------------DPK------------------------------------HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVL-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGK 758
            R+GTHNG+FHCDEAL C ++RL  ++ +A+IVR+R                  DP+                                    HFG +L+A+ L   E    V  L+  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W  PDQ  E     F++ MDL  +EFL  + FY  SWLPAR++V E +A+R+  DPSGEI+ L K  CPWK HL+ LE  +     I +V+Y D  G+
Sbjct:   46 RIGTHNGTFHCDEALACALLRLLPEYRDAEIVRTRDPEKLASCDIVVDVGGEYDPRRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGPSEEDSMVGTLYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVARLNPTWNHPDQDTEA---GFKRAMDLVQEEFLQRLDFYQHSWLPARALVEEALAQRFQVDPSGEIVELAKGACPWKEHLYHLESGLSPPVAIFFVIYTDQAGQ 300          
BLAST of FC929048 vs. ExPASy Swiss-Prot
Match: MYG1_BOVIN (UPF0160 protein MYG1, mitochondrial OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 97/259 (37.45%), Postives = 140/259 (54.05%), Query Frame = 3
Query:  147 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSR------------------DPK------------------------------------HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVL-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGK 758
            R+GTHNG+FHCDEAL C ++RL  ++  A+IVR+R                  DP+                                    HFG +L+A+ L   E    V  L+  +Y+NF+E +DA+DNGI+Q++  +P RY+  T LS+RV +LN  W +P+Q  E     F++ MDL  +EFL  + FY  SWLPAR++V E +A+R+  DPSGEI+ L K  CPWK HL++LE  +     I +V+Y D  G+
Sbjct:   46 RIGTHNGTFHCDEALACALLRLLPEYREAEIVRTRDPEKLAACDIVVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDGMVGTLYDKMYENFVEEVDAVDNGISQWEEGEP-RYLLTTTLSARVARLNPTWNQPNQDTEA---GFKRAMDLVREEFLQRLDFYQNSWLPARTLVEEALAKRFQVDPSGEIIELEKGGCPWKEHLYQLELGLSPAGTIAFVIYTDQAGQ 300          
BLAST of FC929048 vs. ExPASy Swiss-Prot
Match: U160_DICDI (UPF0160 protein OS=Dictyostelium discoideum GN=DDB_G0267768 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.629e-40
Identity = 87/250 (34.80%), Postives = 137/250 (54.80%), Query Frame = 3
Query:  156 THNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDP-------------------------------------------------KHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGK 758
            TH+GSFH DEAL C++++L   + +++I+RSRD                                                  KH+GK++I + L+ ++   ++  L+  +Y + ++ +D +DNG+ +Y +D  PRY + +++S+RVG LN  W EP Q  E  N+ F++ M+L G+ FLD + +Y +SWLP RSIV   +  R     SGEI++L  FCPWK HLF LE+E  I+  IK+VL+ED  G+
Sbjct:    8 THSGSFHADEALACYLLKLLPTYKDSKIIRSRDKSVIEKSTVAVDVGAVYNFEKLRFDHHQSGFTETFDDKHDIKLSSAGLIYKHYGKDIIKQRLDTNDSITEL--LYQKLYDSMIQELDGVDNGVERYPSDIKPRYQSGSSISARVGHLNQGWNEP-QDDEIVNKQFEKAMELMGQYFLDRLDYYGKSWLPCRSIVENALENRKQTHSSGEILILDMFCPWKDHLFSLEQEKDIKTPIKFVLFEDTSGQ 254          
BLAST of FC929048 vs. ExPASy Swiss-Prot
Match: YEY6_YEAST (UPF0160 protein YER156C OS=Saccharomyces cerevisiae GN=YER156C PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.350e-36
Identity = 90/257 (35.02%), Postives = 136/257 (52.92%), Query Frame = 3
Query:  144 KRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPK------------------------------------------------HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQY----DTDKPPRYVNNT-NLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRG 755
            K++ TH+GSFH DE+L  +M+RL  +F +A++VRSR+PK                                                H+G+++I   LN      D+  L+  VYK F+EA+DA DNGI++Y    D++  P + +N  ++   +  +N +W E D S E  +  F +  +  G  F+  VR Y +SWLPA+++V + I ER D D SG+I+VL +FCPWK HL+ELE E  IE  I++VL+ D  G
Sbjct:   15 KQICTHSGSFHADESLAVYMLRLLPEFKDAKLVRSRNPKDWEASDILVDVGAQYDGVKFFDHHQRGFFETFNEKYKTKLSSAGLIFKHYGRDIIKTILNNKVSSSDLDLLYDKVYKQFVEALDANDNGISKYTIPKDSNLEPNFRDNAISIPGIISGMNPNWNE-DTSDESFDRCFARASEFIGGVFVTLVRGYGQSWLPAKALVAQAIDERMDVDKSGKIIVLPQFCPWKEHLYELEREKNIEKQIEFVLFTDSSG 270          
BLAST of FC929048 vs. ExPASy Swiss-Prot
Match: MYG1_MOUSE (UPF0160 protein MYG1, mitochondrial OS=Mus musculus GN=Myg1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.677e-34
Identity = 73/167 (43.71%), Postives = 107/167 (64.07%), Query Frame = 3
Query:  261 HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVL-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGK 758
            HFG++L+A+ L   E    V  ++  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W +P+Q  E     F++ MDL  +EFL  + FY  SWLPAR++V E +A+R+  D SGEI+ L K  CPWK HL+ LE E+  +  I +V+Y D  G+
Sbjct:  137 HFGRKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQW-AEGEPRYAMTTTLSARVARLNPTWNQPNQDTEA---GFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHLYHLESELSPKVAITFVIYTDQAGQ 299          
BLAST of FC929048 vs. ExPASy Swiss-Prot
Match: MYG1_RAT (UPF0160 protein MYG1, mitochondrial OS=Rattus norvegicus GN=Myg1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.802e-34
Identity = 74/167 (44.31%), Postives = 105/167 (62.87%), Query Frame = 3
Query:  261 HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVL-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGK 758
            HFG +L+A+ L   E    V  ++  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W +PDQ  E     F++ MDL  +EFL  + FY  SWLPAR++V E +A+R+  D SGEI+ L K  CPWK HL+ LE E+     I +V+Y D  G+
Sbjct:  138 HFGHKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVSRLNPTWNQPDQDTEA---GFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHLYHLESELSPTVAITFVIYTDQAGQ 300          
BLAST of FC929048 vs. ExPASy Swiss-Prot
Match: YIW4_SCHPO (UPF0160 protein C694.04c OS=Schizosaccharomyces pombe GN=SPAC694.04c PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.107e-30
Identity = 82/255 (32.16%), Postives = 121/255 (47.45%), Query Frame = 3
Query:  141 LKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDP------------------------------------------------KHFGKELI---AKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDR 752
            L ++ TH+G+FH DEAL  +M+R  D+F  AQIVRSRDP                                                KHFG+E+I     +L ++E   D+  L+  VY++F+E +DA DNGI+ Y     P +    +L   V      W    Q  +   E FQ+  DL G  F+ +V  Y  SWLPA+++  E I +  D      I+++ +F PWK HLF++E+E+ IE   KY +Y D +
Sbjct:    4 LVKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYDGIKYFDHHQREFNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINE--QDLETLYEKVYQSFVEGLDANDNGISAYPAGLKPSFKAAMSLPEMVSSFLPAWNSEKQDDQTYLECFQKASDLMGTWFVRSVEHYALSWLPAKTLAREAILKAKD----SPILIVDQFFPWKGHLFDIEKELGIENQFKYAIYSDGK 252          
BLAST of FC929048 vs. ExPASy Swiss-Prot
Match: YK4P_CAEEL (UPF0160 protein C27H6.8 OS=Caenorhabditis elegans GN=C27H6.8 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.937e-28
Identity = 65/164 (39.63%), Postives = 100/164 (60.98%), Query Frame = 3
Query:  261 HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKR-FCPWKLHLFELEEEMKI-EPLIKYVLYED 746
            H+G+E+I + L  +     +   +  +Y+ F+E+IDAIDNGI+QYD    PRY ++ NLSSR G+ N  W EP+  A+   E FQQ M   G+EF  +V++    W PAR I+   + +R++ D SG I++++   CPWK H F++E E  I +  I Y+L+ D
Sbjct:   95 HYGREVINQILGGNVSSSMIDLFYHRLYEQFVESIDAIDNGISQYDG--VPRYHSSGNLSSRTGQFNSHWNEPENDAD---ERFQQAMQFIGEEFSRSVKYLANVWWPAREIIEAAVDKRFEIDASGRIILIENGGCPWKEHFFDIEVEKNIADDNITYILFSD 253          
The following BLAST results are available for this feature:
BLAST of FC929048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MYG1_HUMAN3.105e-4137.84UPF0160 protein MYG1, mitochondrial OS=Homo sapien... [more]
MYG1_BOVIN5.297e-4137.45UPF0160 protein MYG1, mitochondrial OS=Bos taurus ... [more]
U160_DICDI2.629e-4034.80UPF0160 protein OS=Dictyostelium discoideum GN=DDB... [more]
YEY6_YEAST1.350e-3635.02UPF0160 protein YER156C OS=Saccharomyces cerevisia... [more]
MYG1_MOUSE3.677e-3443.71UPF0160 protein MYG1, mitochondrial OS=Mus musculu... [more]
MYG1_RAT4.802e-3444.31UPF0160 protein MYG1, mitochondrial OS=Rattus norv... [more]
YIW4_SCHPO1.107e-3032.16UPF0160 protein C694.04c OS=Schizosaccharomyces po... [more]
YK4P_CAEEL3.937e-2839.63UPF0160 protein C27H6.8 OS=Caenorhabditis elegans ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH1DD06RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929048 ID=FC929048; Name=FC929048; organism=Citrus clementina; type=EST; length=763bp
GCGCAACCAAAGGGTTTAACCAGAAACTCTTCTTCTTCAGCGTGCACAAA
AACCTCTTCACTCGCCCTATCATAGCCATGGCAGGCACCGGTGTTTCTTC
TTCTCCTGCTTACTCCACTTCATCCCCCAGCCAAGCCCCTCTCAAGCGCG
TGGGCACCCACAACGGCAGCTTCCACTGCGACGAGGCCCTTGGTTGCTTC
ATGATTCGCCTCACTGACAAGTTCTTCAACGCCCAGATAGTCCGCTCCCG
CGACCCCAAGCATTTTGGAAAGGAGTTAATAGCTAAGGAACTTAATGTTG
ATGAAGGGCATCCAGACGTGCATCGACTATTTTTGGCTGTTTATAAGAAC
TTCATGGAGGCAATCGATGCTATTGATAACGGAATCAATCAGTATGACAC
AGACAAACCTCCAAGATATGTGAATAATACAAATTTGTCTTCTAGGGTGG
GGAAACTAAATTTGGATTGGACGGAACCTGATCAGTCAGCGGAGAGGGAG
AATGAAGCCTTCCAACAAGGAATGGATCTGGCTGGCAAAGAGTTTCTGGA
CACTGTTCGATTTTATGTGAGATCATGGTTACCAGCACGATCAATTGTAG
TGGAATGTATTGCAGAAAGATATGATTATGATCCAAGTGGTGAAATTATG
GTTTTGAAAAGATTTTGTCCTTGGAAGCTTCACTTGTTTGAGCTTGAGGA
GGAGATGAAGATTGAGCCTCTTATTAAATATGTTCTTTACGAGGACGACA
GGGGCAAACAATG
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