FC929061

Overview
NameFC929061
Unique NameFC929061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15031 contig Ccv1_Contig15031:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929061 vs. ExPASy Swiss-Prot
Match: CLCF_ARATH (Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F PE=2 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 9.761e-71
Identity = 146/239 (61.09%), Postives = 168/239 (70.29%), Query Frame = 1
Query:    1 VGGLYAPSLMIXXXXXXXXXXXXXEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWVPSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVEN-XXXXXXXXXXXXXXXKVSRAMSKEFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSIC 714
            VGGLYAPSLMI             EIIN AIPGN AVA+PQAYALVGMAATLAS+CSVPLTSVLLLFELT+DYRILLPLMGAVGLAIWVPSVANQ KE+D+S+ R+  RGYSSLSP E K E +WR TD AD LEL+V+EN                KV R MSK +VKV+   TL+EA   +K+  QNC++VV+ +DFL GILT+GDI+R L       S   S   D NTC VSS+C
Sbjct:  459 VGGLYAPSLMIGAAVGAVFGGSAAEIINRAIPGNAAVAQPQAYALVGMAATLASMCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQGKESDSSEGRSTGRGYSSLSPSERKTEGVWRHTDNADSLELTVIENPDHNSFLDEETILEDLKVMRVMSKNYVKVSSGTTLREARNILKESHQNCIMVVDDDDFLAGILTHGDIRRYL-------SNNASTILDENTCPVSSVC 690          
BLAST of FC929061 vs. ExPASy Swiss-Prot
Match: CLCE_ARATH (Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 91/248 (36.69%), Postives = 130/248 (52.42%), Query Frame = 1
Query:    1 VGGLYAPSLMIXXXXXXXXXXXXXEIINSAIPGN-------VAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLMGAVGLAIWV---PSVANQAKETDASDKRTLARGYSSLSPMEDKNEVLWRRTDGADELELSVVENXXXXXXXXXXXXXXXKVSRAMSKEFVKVALTVTLKEAIESMKDGQQNCVLVVNGEDFLEGILTYGDIKRCLSKLSSDNSKGDSIASDVNTCLVSSIC 714
            VGG YAPSL I             + I  A+  N       + VA PQAY LVGMAATLA VC VPLT+VLLLFELT+DYRI+LPL+GAVG++ W+    S   + +ET  + KR       SL+  +D++      T+   E+E S+  +                VS AM   F  V ++ +L+EA+  M   +Q+C L+V+ ++   GILT  DI+    + S    +G++   D+    V+ IC
Sbjct:  405 VGGYYAPSLFIGGAAGMAYG----KFIGLALAQNPDFNLSILEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGMSSWITSGQSKRQETRETKETRKRKSQEAVQSLTSSDDESS-----TNNLCEVESSLCLDDSLNQSEELPKSIF--VSEAMRTRFATVMMSTSLEEALTRMLIEKQSCALIVDPDNIFLGILTLSDIQ----EFSKARKEGNNRPKDI---FVNDIC 634          
The following BLAST results are available for this feature:
BLAST of FC929061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CLCF_ARATH9.761e-7161.09Chloride channel protein CLC-f OS=Arabidopsis thal... [more]
CLCE_ARATH4.149e-2936.69Chloride channel protein CLC-e OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3CA08RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929061 ID=FC929061; Name=FC929061; organism=Citrus clementina; type=EST; length=714bp
GTGGGTGGTCTTTATGCACCAAGTTTGATGATTGGTGCAGCTGTTGGTGC
TGTATTTGGTGGTTCAGCTGCAGAAATTATAAATTCAGCCATTCCAGGCA
ATGTCGCTGTTGCAGAGCCGCAGGCCTATGCTCTGGTCGGAATGGCTGCT
ACATTAGCTTCTGTTTGTTCTGTACCCTTGACATCAGTTCTACTTCTCTT
TGAGCTGACTAGAGATTACAGGATATTGCTTCCTCTCATGGGAGCTGTTG
GATTGGCAATATGGGTTCCCTCTGTGGCAAACCAGGCCAAGGAGACGGAT
GCATCTGATAAACGGACTTTGGCTAGGGGTTATTCGTCGCTTTCACCTAT
GGAAGATAAAAATGAGGTTTTATGGAGGAGGACTGATGGCGCAGATGAGT
TAGAACTCTCTGTCGTAGAAAACGCTGCTGACTCTGAAGCAGCTGAAGAA
ATGCTTTTGGAAGAATTGAAGGTTTCTAGGGCTATGTCAAAGGAATTTGT
AAAGGTTGCACTTACTGTAACCTTAAAAGAAGCAATAGAATCCATGAAAG
ATGGCCAACAGAATTGTGTCCTTGTGGTTAACGGTGAAGATTTCCTGGAG
GGCATATTAACATATGGTGACATTAAACGTTGCTTGTCCAAACTGTCTAG
TGATAATTCCAAGGGCGATTCAATAGCTTCCGATGTGAATACATGTCTTG
TTTCCTCTATTTGT
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