FC929064

Overview
NameFC929064
Unique NameFC929064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.425e-55
Identity = 105/133 (78.95%), Postives = 113/133 (84.96%), Query Frame = -3
Query:  248 MAVPXXXXXXXXXXXXXXKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 646
            MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYC EIAHNVSTKKRK IVERA+QLDVVVTN+LARLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.220e-54
Identity = 102/133 (76.69%), Postives = 112/133 (84.21%), Query Frame = -3
Query:  248 MAVPXXXXXXXXXXXXXXKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 646
            MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG  LMPN+GYGSDKKTRHYLPNGFKKF+VHN +ELELLMMHNRTYC EIAHN+STKKRK IVERA+QLDVVV+NKL RLRSQE+E
Sbjct:    1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.674e-42
Identity = 79/114 (69.30%), Postives = 98/114 (85.96%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 9.674e-42
Identity = 79/114 (69.30%), Postives = 98/114 (85.96%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.674e-42
Identity = 79/114 (69.30%), Postives = 98/114 (85.96%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 9.674e-42
Identity = 79/114 (69.30%), Postives = 98/114 (85.96%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.674e-42
Identity = 79/114 (69.30%), Postives = 98/114 (85.96%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.263e-41
Identity = 82/114 (71.93%), Postives = 93/114 (81.58%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LPNGF+K +VHNV ELE+LMM NR YC EIAH VS+KKRK IVERA QL + VTN  ARLRSQE E
Sbjct:   21 RHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.263e-41
Identity = 78/114 (68.42%), Postives = 98/114 (85.96%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR + +K NWR+P+GID+RVRR+FKG +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + +TN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135          
BLAST of FC929064 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.397e-40
Identity = 78/114 (68.42%), Postives = 96/114 (84.21%), Query Frame = -3
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR + ++ NWR+P+GID+RVR  FKG +LMPNIGYGS+KKT+H LP+GFKKF+VHNV ELE+L+M N++YC EIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   22 RHQSDRYVKIRRNWRKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135          
The following BLAST results are available for this feature:
BLAST of FC929064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL321_ARATH3.425e-5578.9560S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH2.220e-5476.6960S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_RAT9.674e-4269.3060S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG9.674e-4269.3060S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE9.674e-4269.3060S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA9.674e-4269.3060S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN9.674e-4269.3060S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_SPOFR1.263e-4171.9360S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_BOVIN1.263e-4168.4260S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_ICTPU1.397e-4068.4260S ribosomal protein L32 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE02RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929064 ID=FC929064|Name=FC929064|organism=Citrus clementina|type=EST|length=723bp
TTTTTTTTTTTTTTTTTAGTGCAAAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCATGCTCCACAA
AAGACAACAAATTCAAAATATCATTCGGGTGACAAATAGAAAATACATCA
TAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAACCTAGGAAACA
TTTGGCCAAAAGCAAACACTAACACAAAATATACAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACATCCA
ATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGGTTGATACATTG
TGGGCTATCTCAACACAATAAGTCCTGTTGTGCATCATCAAGAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAGATAGT
GGCGTGTTTTCTTGTCCGAGCCGTATCCAATATTGGGCATCAAAACACAT
CCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACTCTGGGGCCTCTTGAACTTCT
TGAGACGCTTCTTCACTATCTTCTTGGTCAGCAAAGGAACAGCCATTTTT
CTGAAACGATGAGCCGCGGCTTCTGCCAACAAAAGACAGTTGAGACAGCA
AAACATTCGGAAAAAAAAAAAAA
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