FC929083

Overview
NameFC929083
Unique NameFC929083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9269 contig Ccv1_Contig9269:11..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.003e-71
Identity = 126/150 (84.00%), Postives = 133/150 (88.67%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            MPNP+VFFDM+VGGQPAGRIVMELFAD TPRTAENFRALCTGEKG G+SGKPLHYK SSFHRVIPGFMCQ            ESIYG++FADENF+KKHTGPGILSMANAGP TNGSQFF+CTA TEWLDGKHVVFGQVVEGMDVVKAIE
Sbjct:    1 MPNPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIE 150          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.462e-68
Identity = 119/150 (79.33%), Postives = 130/150 (86.67%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            M NPKVFFD+T+GG PAGR+VMELFAD TP+TAENFRALCTGEKG+GK GKPLHYKGS+FHRVIPGFMCQ            ESIYG++F DENFVKKHTGPGILSMANAGPGTNGSQFF+CTA TEWL+GKHVVFGQVVEGMDV+K  E
Sbjct:    1 MANPKVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAE 150          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.314e-65
Identity = 114/150 (76.00%), Postives = 128/150 (85.33%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            M NPKVFFDM + G PAGRIVMEL+AD TPRTAENFRALCTGEKG+G+SGKPLHYKGS+FHRVIP FMCQ            ESIYG++FADENF+K+HTGPGILSMANAG GTNGSQFF+CT  TEWLDGKHVVFG+V+EGM+VV+ IE
Sbjct:    1 MSNPKVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIE 150          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.392e-63
Identity = 112/148 (75.68%), Postives = 126/148 (85.14%), Query Frame = 3
Query:  354 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            +PKVFFDMT+GG PAG+IVMEL+ D TP+TAENFRALCTGEKG+G+SGKPLH+KGSSFHRVIP FMCQ            ESIYG++F DENF +KHTGPGILSMANAG  TNGSQFF+CT  T+WLDGKHVVFGQVVEG+DVVKAIE
Sbjct:    4 HPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIE 151          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.102e-63
Identity = 114/148 (77.03%), Postives = 124/148 (83.78%), Query Frame = 3
Query:  354 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            NPKV+FDMTVGG+ AGRIVMEL+AD TP TAENFRALCTGE+GIGK GKPLHYKGSSFHRVIP FMCQ            ESIYGS+F DENF+KKHTGPGILSMANAG  TNGSQFF+CT  T WLDGKHVVFGQVVEG++VV+ IE
Sbjct:    4 NPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIE 151          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.910e-63
Identity = 113/150 (75.33%), Postives = 124/150 (82.67%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            M  PKV+FDMT+ GQPAGRIVMEL+ D TPRTAENFRALCTGEKG+G +GKPLH+KGS FHRVIP FMCQ            ESIYGS+F DENF +KHTGPGILSMANAG  TNGSQFF+CT  T+WLDGKHVVFGQVVEG+DVVKAIE
Sbjct:    1 MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIE 150          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.010e-62
Identity = 113/150 (75.33%), Postives = 123/150 (82.00%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            M NP+VFFDMTVGG PAGRIVMEL+A+  P+TAENFRALCTGEKG+GKSGKPLHYKGS+FHRVIP FMCQ            ESIYG +F DE FV+K   PG+LSMANAGP TNGSQFF+CT  T WLDGKHVVFGQVVEGMDVVKAIE
Sbjct:    1 MANPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIE 150          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.429e-62
Identity = 114/150 (76.00%), Postives = 122/150 (81.33%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            M NPKV+FDMTVG + AGRIVMEL+AD  P TAENFRALCTGE+GIGKSGKPLHYKGS+FHRVIP FMCQ            ESIYG +F DENFVKKHTGPGILSM NAG  TNGSQFF+CT  T WLDGKHVVFGQVVEGMDVV+ IE
Sbjct:    1 MVNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIE 150          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.639e-62
Identity = 111/150 (74.00%), Postives = 123/150 (82.00%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            M NP+VFFDM++ G P GRI MELFAD TP TAENFRALCTGEKG+GK GKPLH+KGS FHRVIPGFMCQ            ESIYG++F DENF+KKHTG GILSMAN+GP TNGSQFF+CT  T WLDGKHVVFGQVV+G+DVVKAIE
Sbjct:    1 MSNPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIE 150          
BLAST of FC929083 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.441e-60
Identity = 109/150 (72.67%), Postives = 122/150 (81.33%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSEFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTANTEWLDGKHVVFGQVVEGMDVVKAIE 797
            M NPKVFFD+ +G   AGR+VMELFADVTPRTA NFRALCTGE GIGK+GK LHYKGS+FHR+IPGFMCQ            ESIYGS+F DENF  KHTGPGILSMAN+GP TNGSQFF+CT  T WLDGKHVVFG+VV+G +VVKA+E
Sbjct:    1 MANPKVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAME 150          
The following BLAST results are available for this feature:
BLAST of FC929083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
CYPH_CATRO9.003e-7184.00Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_SOLLC5.462e-6879.33Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_LUPLU3.314e-6576.00Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19B_ARATH1.392e-6375.68Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP19A_ARATH3.102e-6377.03Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP18C_ARATH6.910e-6375.33Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CYPH_MAIZE2.010e-6275.33Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYPH_BRANA3.429e-6276.00Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP18D_ARATH7.639e-6274.00Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CP19C_ARATH1.441e-6072.67Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3CB12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929083 ID=FC929083; Name=FC929083; organism=Citrus clementina; type=EST; length=798bp
GGCACGAGGTTGCTGGCGACGGCAAGGAGAATGGCCTCATTAGCAACCAC
TTCAGAGTCCAGGCGGTACTGCTGGCCTAACATGTAATGCCCCACGTAGT
CTGCACATTTTTCGGGAACAGTCGCCCATCCTATAACGTTATTAGTTTCC
ACTCCGAGTCGCCAACTCAGGCAGGACAAGCCGGGCACATCGTTGTTCCG
GGAACCGGCTTTCGGTCGGAGAAGATGAATCTGATGGGGGATGTCCATGC
TAAATCCATGGGATGTTGCTGCCTCGTGCCGAATTCGGCACGAGGATCAG
AAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAATG
CCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCCGG
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAG
CCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCAGAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAACACCGAGTGGCTCGATGGGAAGCACGTTG
TGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGA
back to top