FC929112

Overview
NameFC929112
Unique NameFC929112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15037 contig Ccv1_Contig15037:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929112 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.300e-28
Identity = 51/124 (41.13%), Postives = 85/124 (68.55%), Query Frame = 3
Query:   12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 383
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG+K  + +  W +       P+K++L+ +
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 895          
BLAST of FC929112 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.300e-28
Identity = 51/124 (41.13%), Postives = 85/124 (68.55%), Query Frame = 3
Query:   12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 383
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG+K  + +  W +       P+K++L+ +
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 895          
BLAST of FC929112 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.300e-28
Identity = 51/124 (41.13%), Postives = 85/124 (68.55%), Query Frame = 3
Query:   12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 383
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG+K  + +  W +       P+K++L+ +
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 895          
BLAST of FC929112 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.907e-26
Identity = 50/124 (40.32%), Postives = 82/124 (66.13%), Query Frame = 3
Query:   12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 383
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NP G +   +F C A+ASW   + ++L +   ++LHG+K  +    W Q      P +K++L+ +
Sbjct:  762 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK-DDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAF 884          
BLAST of FC929112 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24
Identity = 50/134 (37.31%), Postives = 82/134 (61.19%), Query Frame = 3
Query:   12 KSLIENS----------AITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 383
            K+L+EN+          AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NP G +   +F C A+ASW   + ++L +   ++LHG+K  +    W Q      P +K++L+ +
Sbjct:  762 KTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK-DDLRDMFYKILHGFKDQVGEDNWQQFSEQFPPLLKERLAAF 894          
BLAST of FC929112 vs. ExPASy Swiss-Prot
Match: TNPO_DICDI (Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.204e-20
Identity = 47/125 (37.60%), Postives = 81/125 (64.80%), Query Frame = 3
Query:    6 LNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSK 380
            LN+ ++EN+A+T+GRL  V P  +SP ++ F+Q WC+A+    DD EK+ AFRG+  ++  NP+GAL  LV++C A+ASW +++  +L+    ++LH YK  +  G W Q  +     +++ L++
Sbjct:  799 LNRGVLENTAVTIGRLGIVSPADISPFVDKFIQCWCMAIRRKTDDIEKDSAFRGMWLIINNNPNGALRHLVYICDAVASWDKMQ-PDLYEAYFKLLHMYKTSM-GGVWAQFYNQFPEQLREILNE 921          
BLAST of FC929112 vs. ExPASy Swiss-Prot
Match: IMB2_SCHPO (Importin subunit beta-2 OS=Schizosaccharomyces pombe GN=kap104 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.450e-13
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 3
Query:    9 NKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGA 326
            N +++EN AIT+GRL    PELV+PH+E F QPW   +  + ++ EK+ AFRG C ++  NP  ALS L+ M     + +E  S EL +   ++L G  ++    A
Sbjct:  788 NTTVLENVAITIGRLGVYNPELVAPHLELFYQPWFEIIKTVGENEEKDSAFRGFCNILACNPQ-ALSYLLPMFVLCVAEYENPSAELRDMFQKILQGSVELFNGKA 892          
The following BLAST results are available for this feature:
BLAST of FC929112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TNPO1_MOUSE9.300e-2841.13Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2[more]
TNPO1_HUMAN9.300e-2841.13Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2[more]
TNPO1_BOVIN9.300e-2841.13Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2[more]
TNPO2_MOUSE3.907e-2640.32Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1[more]
TNPO2_HUMAN8.147e-2437.31Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3[more]
TNPO_DICDI3.204e-2037.60Transportin OS=Dictyostelium discoideum GN=tnpo PE... [more]
IMB2_SCHPO8.450e-1338.68Importin subunit beta-2 OS=Schizosaccharomyces pom... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH1DG09RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929112 ID=FC929112; Name=FC929112; organism=Citrus clementina; type=EST; length=793bp
AGGAGTTGAACAAGTCACTCATAGAAAATAGTGCAATTACACTTGGAAGG
CTTGCGTGGGTTTGCCCAGAACTTGTGTCGCCCCACATGGAACATTTCAT
GCAACCTTGGTGCATTGCTTTGTCTATGATCCGTGATGATACTGAAAAGG
AGGATGCATTCCGAGGTCTTTGTGCAATGGTAAAAGCGAATCCATCAGGG
GCGCTAAGTTCACTTGTTTTCATGTGCAGAGCCATTGCTAGTTGGCATGA
AATAAGAAGTGAAGAGCTACATAATGAAGTTTGCCAGGTGTTGCATGGTT
ATAAACAGATGCTTAGAAATGGAGCATGGGACCAGTGTATGTCTGCTTTG
GAGCCCCCAGTGAAGGACAAGCTGTCAAAATATCAAGTGTAATAGTTCCC
TGGTCTTTGGTGCTGACTTGTCTTCAGTATGTGGTTCTTCAAATTTGTGC
ATTGGCAATGCTTCTGTCGGTTATTCTGCATTCCCTGATGATATCGGAGG
TGTCATTCATTTAAGCATATATCAAAGTTTTGGCCAAAATTTTTTCAGGC
ATGACAGTATAGTCACCTTAATCATTAAAGCTTGAAGTTGCTATCCTCTC
CAAACATTTATATATGCATCGGTCCTCCCCCGCAGCATTGGGTCTTAAGA
AATGAAGCAACCTGAGGTTTGAATGTGGATATGTACAGGGTGCAGCTTTT
CAAGCTTTGGGGAGTATTTATCTTAGCGTTTAGTGTTTCAAGGGTGACCA
AAAGTATTAATTAAGGCTTTTGGTTCATGGTTTTTAAATTTCN
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