FC929113

Overview
NameFC929113
Unique NameFC929113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15038 contig Ccv1_Contig15038:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929113 vs. ExPASy Swiss-Prot
Match: SYP43_ARATH (Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.436e-20
Identity = 47/55 (85.45%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 IDYNIQNVATTVDEGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLILKEII 165
            IDYNIQNVA+TVD+GLKQLQKAERTQ++GGMVMCA+VLVI+CF+MLVLLILKEI+
Sbjct:  276 IDYNIQNVASTVDDGLKQLQKAERTQRQGGMVMCASVLVILCFIMLVLLILKEIL 330          
BLAST of FC929113 vs. ExPASy Swiss-Prot
Match: SYP41_ARATH (Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.746e-18
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 1
Query:    1 IDYNIQNVATTVDEGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLILKEI 162
            IDYNI+NVATTV++GLKQLQKAERTQ+ GGMV CA+VLVI+CF+ML+LLILKEI
Sbjct:  267 IDYNIENVATTVEDGLKQLQKAERTQRHGGMVKCASVLVILCFIMLLLLILKEI 320          
BLAST of FC929113 vs. ExPASy Swiss-Prot
Match: SYP42_ARATH (Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.336e-17
Identity = 38/56 (67.86%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 IDYNIQNVATTVDEGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLILKEIIF 168
            IDYN+QNV+T+V+EG KQLQKAERTQ++G MV CAT+L+++C +M+VLLILK I+F
Sbjct:  268 IDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF 323          
The following BLAST results are available for this feature:
BLAST of FC929113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP43_ARATH2.436e-2085.45Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 ... [more]
SYP41_ARATH1.746e-1881.48Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 ... [more]
SYP42_ARATH7.336e-1767.86Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1DG10RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929113 ID=FC929113; Name=FC929113; organism=Citrus clementina; type=EST; length=786bp
ATAGATTACAACATTCAAAATGTAGCGACAACAGTTGATGAAGGCCTCAA
ACAACTGCAGAAGGCGGAGAGAACACAAAAGAAAGGGGGGATGGTAATGT
GTGCTACAGTACTTGTTATTATGTGCTTTGTCATGTTAGTCCTCCTAATC
CTGAAGGAGATAATCTTTTGATCCCCAAACCTAATTGTTTGTACGAACCA
TTCACATATCACATGTTGTTGCTGACTCTACCCGCTGGCAACCCTTTTGC
GCTGTGGGATTATGGCGTGGCTGGCTATGCCTTGCTGGAAGAAAGCGGGA
GTTTTGAATTGCCCCATCATCTCGTATCTGTAAAAGAGCCTCGTGCCGAA
TTCGGCACGAGGAAGCAACTTAACTACTTTCGAACTCTGATTCCCGTAAG
CAGAGATCTTTCTGATTTGAAGAACATGGAAACTACCTGCGCAGGAAATA
ACTGGTCAGAGAGTTTCATCGTTCCTCCGGTGGCCAGTATTGCTGATGAT
GATGTCATGAACGACAATCTTGATCTTCTTAATGTCCCTCAATATGGAAG
AAATCCCGACTACATGGGTTAAGTGCAGCACTGCTTTTTTTTTTTTTCTG
TTTTGTTTAATTAAATAAATGATAGGTATACTATTACCTATCAATCATGG
CAATGTCTTAGTCTGGTTTAATTCAACTTATAAGATTTCTTAAGATGTAC
AAGAGATCTTTTTATTTACTTTTGAGCTAATTATTTCCCTGAAAAAGGAA
ATAAATCAATAAAAGTTATTGTGTGTGTCAAAAAAA
back to top