FC929123

Overview
NameFC929123
Unique NameFC929123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929123_ssr53 microsatellite FC929123_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11040 contig Ccv1_Contig11040:209..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929123 vs. ExPASy Swiss-Prot
Match: MO25N_ARATH (Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.422e-91
Identity = 164/200 (82.00%), Postives = 188/200 (94.00%), Query Frame = 2
Query:  194 MKGLFKSKPRTPVDIVRQTRDLIIYANRSA---DVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 784
            MKGLFKSKPRTP D+VRQTRDL+++++RS    D+R+SKR++KMAEL +NIR++KSILYGNSE+EPV+EACAQLT EFF+E+TLRLLITCLPKLNLE RKDATQVVANLQRQQV+S+LIASDYLEANIDL+D+LI G+ENTDMALHYGAM RECIRHQ VA+YVLES H+KKFFDYIQLPNFDIAADAAATFKELLTRHK
Sbjct:    1 MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIASDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLPNFDIAADAAATFKELLTRHK 200          
BLAST of FC929123 vs. ExPASy Swiss-Prot
Match: MO25M_ARATH (Putative MO25-like protein At4g17270 OS=Arabidopsis thaliana GN=At4g17270 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.645e-85
Identity = 157/200 (78.50%), Postives = 181/200 (90.50%), Query Frame = 2
Query:  194 MKGLFKSKPRTPVDIVRQTRDLIIYANRS---ADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 784
            M+GLFKSKPRTP DIVRQTRDL++YA+RS    D+RESKRE+KM EL K+IR+LK ILYGNSE+EPV+EACAQLT EFF+ +TLR L+T LP LNLEARKDATQVVANLQRQQV+S+LIA+DYLE+NIDL+D L+ G+ENTDMALHYG M RECIRHQ VA+YVL+S+H+KKFF YIQLPNFDIAADAAATFKELLTRHK
Sbjct:    1 MRGLFKSKPRTPADIVRQTRDLLLYADRSNSFPDLRESKREEKMVELSKSIRDLKLILYGNSEAEPVAEACAQLTQEFFKADTLRRLLTSLPNLNLEARKDATQVVANLQRQQVNSRLIAADYLESNIDLMDFLVDGFENTDMALHYGTMFRECIRHQIVAKYVLDSEHVKKFFYYIQLPNFDIAADAAATFKELLTRHK 200          
BLAST of FC929123 vs. ExPASy Swiss-Prot
Match: MO25L_ARATH (MO25-like protein At2g03410 OS=Arabidopsis thaliana GN=At2g03410 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.234e-66
Identity = 126/201 (62.69%), Postives = 160/201 (79.60%), Query Frame = 2
Query:  194 MKGLFKSKPRTPVDIVRQTRDLIIYAN---RSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT-DMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 784
            MKGLFK+K R P +IVRQTRDLI  A       D R SKR    AELC+NIR+LKSILYGN E+EPV EAC  LT EFFR +TLR LI  +PKL+LEARKDATQ+VANLQ+QQV  +L+AS+YLE+N+D++D L+ G ++  ++ALHY  ML+EC+RHQ VA+Y+LES++++KFFDY+QLP FD+A DA+  F+ELLTRHK
Sbjct:    1 MKGLFKNKSRLPGEIVRQTRDLIALAESEEEETDARNSKRLGICAELCRNIRDLKSILYGNGEAEPVPEACLLLTQEFFRADTLRPLIKSIPKLDLEARKDATQIVANLQKQQVEFRLVASEYLESNLDVIDSLVEGIDHDHELALHYTGMLKECVRHQVVAKYILESKNLEKFFDYVQLPYFDVATDASKIFRELLTRHK 201          
BLAST of FC929123 vs. ExPASy Swiss-Prot
Match: CAB39_HUMAN (Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.561e-35
Identity = 74/193 (38.34%), Postives = 119/193 (61.66%), Query Frame = 2
Query:  206 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 784
            F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATFK+LLTRHK
Sbjct:    5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK 196          
BLAST of FC929123 vs. ExPASy Swiss-Prot
Match: CAB39_BOVIN (Calcium-binding protein 39 OS=Bos taurus GN=CAB39 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.561e-35
Identity = 74/193 (38.34%), Postives = 119/193 (61.66%), Query Frame = 2
Query:  206 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 784
            F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATFK+LLTRHK
Sbjct:    5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK 196          
BLAST of FC929123 vs. ExPASy Swiss-Prot
Match: CAB39_MOUSE (Calcium-binding protein 39 OS=Mus musculus GN=Cab39 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.039e-35
Identity = 74/193 (38.34%), Postives = 119/193 (61.66%), Query Frame = 2
Query:  206 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 784
            F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATFK+LLTRHK
Sbjct:    5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLGTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK 196          
BLAST of FC929123 vs. ExPASy Swiss-Prot
Match: MO25M_CAEEL (MO25-like protein 2 OS=Caenorhabditis elegans GN=mop-25.2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.322e-34
Identity = 77/198 (38.89%), Postives = 118/198 (59.60%), Query Frame = 2
Query:  194 MKGLFKSKPRTPVDIVRQTRDLIIYANR-SADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 784
            +K LF    +TP D+V+  RD ++  +R   +  E K E  + E  K +   K+ +YG+  +EP +E   QL  E +  N L +LI  L K   E +KD   V  NL R+Q+ ++    +YL A  ++L  L+ GYE  D+AL  G+MLRE +RH+ +AR VL S++ ++FF ++Q   FDIA DA +TFK+L+T+HK
Sbjct:    2 LKPLFGKADKTPADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDANEPNNEQVTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEYLAARPEILITLLLGYEQPDIALTCGSMLREAVRHEHLARIVLYSEYFQRFFVFVQSDVFDIATDAFSTFKDLMTKHK 199          
BLAST of FC929123 vs. ExPASy Swiss-Prot
Match: CB39L_HUMAN (Calcium-binding protein 39-like OS=Homo sapiens GN=CAB39L PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.726e-34
Identity = 79/199 (39.70%), Postives = 121/199 (60.80%), Query Frame = 2
Query:  191 KMKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 784
            K   LF    + P +IV+  +D     N +   ++ K+ DK +E + K+++ +K IL G +E EP +EA AQL  E +    L  LI  L  ++ E +KD TQ+  N+ R+Q+ ++    +Y+ A+  +L +L+ GYE   +AL  G MLRECIRH+ +A+ +L S   + FF Y++L  FDIA+DA ATFK+LLTRHK
Sbjct:    2 KKMPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHK 195          
BLAST of FC929123 vs. ExPASy Swiss-Prot
Match: CB39L_MOUSE (Calcium-binding protein 39-like OS=Mus musculus GN=Cab39l PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 6.559e-34
Identity = 77/199 (38.69%), Postives = 121/199 (60.80%), Query Frame = 2
Query:  191 KMKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 784
            K   LF    + P +IV+  +D     N +   ++ K+ DK +E + K+++ +K IL G ++ EP +EA AQL  E +    L  LI  L  ++ E +KD TQ+  N+ R+Q+ ++    +Y+ ++  +L +L+ GYE   +AL  G MLRECIRH+ +A+ +L S   + FF Y++L  FDIA+DA ATFK+LLTRHK
Sbjct:    2 KKMPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYISSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHK 195          
BLAST of FC929123 vs. ExPASy Swiss-Prot
Match: MO25_DROME (Protein Mo25 OS=Drosophila melanogaster GN=Mo25 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 71/197 (36.04%), Postives = 124/197 (62.94%), Query Frame = 2
Query:  203 LFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSE-ACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT--DMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 784
            LF    ++PV++V+  ++ I     + +  + K E    ++ KN+  +K++LYG+S++EP ++   AQL+ E +  N L LLI  L +++ E +K    +  N+ R+Q+ ++    +Y+    ++L  L+AGYE+   ++AL+ G MLREC R++++A+ +L S    KFF Y+++  FDIA+DA +TFKELLTRHK
Sbjct:    3 LFGKSQKSPVELVKSLKEAI----NALEAGDRKVEKAQEDVSKNLVSIKNMLYGSSDAEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFNNVLRRQIGTRSPTVEYICTKPEILFTLMAGYEDAHPEIALNSGTMLRECARYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHK 195          
The following BLAST results are available for this feature:
BLAST of FC929123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
MO25N_ARATH3.422e-9182.00Putative MO25-like protein At5g47540 OS=Arabidopsi... [more]
MO25M_ARATH1.645e-8578.50Putative MO25-like protein At4g17270 OS=Arabidopsi... [more]
MO25L_ARATH2.234e-6662.69MO25-like protein At2g03410 OS=Arabidopsis thalian... [more]
CAB39_HUMAN1.561e-3538.34Calcium-binding protein 39 OS=Homo sapiens GN=CAB3... [more]
CAB39_BOVIN1.561e-3538.34Calcium-binding protein 39 OS=Bos taurus GN=CAB39 ... [more]
CAB39_MOUSE2.039e-3538.34Calcium-binding protein 39 OS=Mus musculus GN=Cab3... [more]
MO25M_CAEEL1.322e-3438.89MO25-like protein 2 OS=Caenorhabditis elegans GN=m... [more]
CB39L_HUMAN1.726e-3439.70Calcium-binding protein 39-like OS=Homo sapiens GN... [more]
CB39L_MOUSE6.559e-3438.69Calcium-binding protein 39-like OS=Mus musculus GN... [more]
MO25_DROME1.158e-3036.04Protein Mo25 OS=Drosophila melanogaster GN=Mo25 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CD10RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929123 ID=FC929123; Name=FC929123; organism=Citrus clementina; type=EST; length=784bp
ACAACTCATTCAGCAAAATTAAATTCGAAAGCTGAAACCCTAAAGCCTAA
TTAGAAGAAGAAGATACACAATAGGAATCTGTGCGTCAAAGCCGAAAGCT
GAGGCGCTCTCAGCCTCGGCGAGTCAATCGGTCCAGCGCCTCTCGAGCTC
AGCCAGTTCAAGTTCGATTAACGAATTAGACCCTAACACAAAAATGAAGG
GACTTTTCAAATCCAAGCCTCGTACTCCCGTCGACATCGTCCGCCAAACT
CGGGATCTTATTATTTACGCCAATCGCAGCGCAGATGTTCGTGAATCGAA
GCGCGAAGACAAGATGGCAGAGTTATGTAAAAACATCAGGGAGTTAAAGT
CAATACTTTATGGCAATAGTGAATCTGAGCCAGTTTCAGAGGCATGTGCA
CAATTGACTGCAGAGTTCTTCAGGGAAAACACGTTACGGCTTTTGATAAC
TTGTCTTCCAAAGTTGAACTTGGAGGCAAGGAAAGATGCCACTCAGGTTG
TTGCTAATTTACAGAGGCAACAAGTTCACTCAAAGTTGATTGCCTCTGAC
TACTTAGAAGCAAACATAGATCTTTTGGATATTCTGATAGCTGGTTATGA
AAACACAGACATGGCTTTACATTATGGTGCTATGCTTAGGGAGTGTATTC
GTCATCAGAGTGTTGCAAGATATGTGTTGGAATCCCAGCACATGAAGAAG
TTTTTTGACTATATACAGCTTCCAAATTTTGACATTGCTGCAGATGCTGC
TGCAACTTTTAAGGAACTGTTGACAAGGCACAAA
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