FC929169

Overview
NameFC929169
Unique NameFC929169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929169_ssr53 microsatellite FC929169_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11040 contig Ccv1_Contig11040:209..1037. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929169 vs. ExPASy Swiss-Prot
Match: MO25N_ARATH (Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 8.387e-99
Identity = 176/215 (81.86%), Postives = 202/215 (93.95%), Query Frame = 2
Query:  194 MKGLFKSKPRTPVDIVRQTRDLIIYANRSA---DVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFF 829
            MKGLFKSKPRTP D+VRQTRDL+++++RS    D+R+SKR++KMAEL +NIR++KSILYGNSE+EPV+EACAQLT EFF+E+TLRLLITCLPKLNLE RKDATQVVANLQRQQV+S+LIASDYLEANIDL+D+LI G+ENTDMALHYGAM RECIRHQ VA+YVLES H+KKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFL+KN +WFF
Sbjct:    1 MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIASDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFF 215          
BLAST of FC929169 vs. ExPASy Swiss-Prot
Match: MO25M_ARATH (Putative MO25-like protein At4g17270 OS=Arabidopsis thaliana GN=At4g17270 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 8.982e-93
Identity = 169/215 (78.60%), Postives = 194/215 (90.23%), Query Frame = 2
Query:  194 MKGLFKSKPRTPVDIVRQTRDLIIYANRS---ADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFF 829
            M+GLFKSKPRTP DIVRQTRDL++YA+RS    D+RESKRE+KM EL K+IR+LK ILYGNSE+EPV+EACAQLT EFF+ +TLR L+T LP LNLEARKDATQVVANLQRQQV+S+LIA+DYLE+NIDL+D L+ G+ENTDMALHYG M RECIRHQ VA+YVL+S+H+KKFF YIQLPNFDIAADAAATFKELLTRHKSTVAEFL KN +WFF
Sbjct:    1 MRGLFKSKPRTPADIVRQTRDLLLYADRSNSFPDLRESKREEKMVELSKSIRDLKLILYGNSEAEPVAEACAQLTQEFFKADTLRRLLTSLPNLNLEARKDATQVVANLQRQQVNSRLIAADYLESNIDLMDFLVDGFENTDMALHYGTMFRECIRHQIVAKYVLDSEHVKKFFYYIQLPNFDIAADAAATFKELLTRHKSTVAEFLIKNEDWFF 215          
BLAST of FC929169 vs. ExPASy Swiss-Prot
Match: MO25L_ARATH (MO25-like protein At2g03410 OS=Arabidopsis thaliana GN=At2g03410 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.441e-74
Identity = 138/216 (63.89%), Postives = 174/216 (80.56%), Query Frame = 2
Query:  194 MKGLFKSKPRTPVDIVRQTRDLIIYAN---RSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT-DMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFF 829
            MKGLFK+K R P +IVRQTRDLI  A       D R SKR    AELC+NIR+LKSILYGN E+EPV EAC  LT EFFR +TLR LI  +PKL+LEARKDATQ+VANLQ+QQV  +L+AS+YLE+N+D++D L+ G ++  ++ALHY  ML+EC+RHQ VA+Y+LES++++KFFDY+QLP FD+A DA+  F+ELLTRHKSTVAE+L+KNY WFF
Sbjct:    1 MKGLFKNKSRLPGEIVRQTRDLIALAESEEEETDARNSKRLGICAELCRNIRDLKSILYGNGEAEPVPEACLLLTQEFFRADTLRPLIKSIPKLDLEARKDATQIVANLQKQQVEFRLVASEYLESNLDVIDSLVEGIDHDHELALHYTGMLKECVRHQVVAKYILESKNLEKFFDYVQLPYFDVATDASKIFRELLTRHKSTVAEYLAKNYEWFF 216          
BLAST of FC929169 vs. ExPASy Swiss-Prot
Match: CAB39_HUMAN (Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.567e-39
Identity = 81/208 (38.94%), Postives = 129/208 (62.02%), Query Frame = 2
Query:  206 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFF 829
            F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATFK+LLTRHK   AEFL ++Y+ FF
Sbjct:    5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFF 211          
BLAST of FC929169 vs. ExPASy Swiss-Prot
Match: CAB39_BOVIN (Calcium-binding protein 39 OS=Bos taurus GN=CAB39 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.567e-39
Identity = 81/208 (38.94%), Postives = 129/208 (62.02%), Query Frame = 2
Query:  206 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFF 829
            F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATFK+LLTRHK   AEFL ++Y+ FF
Sbjct:    5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFF 211          
BLAST of FC929169 vs. ExPASy Swiss-Prot
Match: CAB39_MOUSE (Calcium-binding protein 39 OS=Mus musculus GN=Cab39 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.352e-39
Identity = 81/208 (38.94%), Postives = 129/208 (62.02%), Query Frame = 2
Query:  206 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFF 829
            F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATFK+LLTRHK   AEFL ++Y+ FF
Sbjct:    5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLGTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFF 211          
BLAST of FC929169 vs. ExPASy Swiss-Prot
Match: MO25M_CAEEL (MO25-like protein 2 OS=Caenorhabditis elegans GN=mop-25.2 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.718e-39
Identity = 84/213 (39.44%), Postives = 128/213 (60.09%), Query Frame = 2
Query:  194 MKGLFKSKPRTPVDIVRQTRDLIIYANR-SADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFF 829
            +K LF    +TP D+V+  RD ++  +R   +  E K E  + E  K +   K+ +YG+  +EP +E   QL  E +  N L +LI  L K   E +KD   V  NL R+Q+ ++    +YL A  ++L  L+ GYE  D+AL  G+MLRE +RH+ +AR VL S++ ++FF ++Q   FDIA DA +TFK+L+T+HK+  AE+L  NY+ FF
Sbjct:    2 LKPLFGKADKTPADVVKNLRDALLVIDRHGTNTSERKVEKAIEETAKMLALAKTFIYGSDANEPNNEQVTQLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNLLRRQIGTRSPTVEYLAARPEILITLLLGYEQPDIALTCGSMLREAVRHEHLARIVLYSEYFQRFFVFVQSDVFDIATDAFSTFKDLMTKHKNMCAEYLDNNYDRFF 214          
BLAST of FC929169 vs. ExPASy Swiss-Prot
Match: CB39L_HUMAN (Calcium-binding protein 39-like OS=Homo sapiens GN=CAB39L PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.274e-38
Identity = 86/214 (40.19%), Postives = 131/214 (61.21%), Query Frame = 2
Query:  191 KMKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFF 829
            K   LF    + P +IV+  +D     N +   ++ K+ DK +E + K+++ +K IL G +E EP +EA AQL  E +    L  LI  L  ++ E +KD TQ+  N+ R+Q+ ++    +Y+ A+  +L +L+ GYE   +AL  G MLRECIRH+ +A+ +L S   + FF Y++L  FDIA+DA ATFK+LLTRHK  VA+FL +NY+  F
Sbjct:    2 KKMPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIF 210          
BLAST of FC929169 vs. ExPASy Swiss-Prot
Match: CB39L_MOUSE (Calcium-binding protein 39-like OS=Mus musculus GN=Cab39l PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 4.841e-38
Identity = 84/214 (39.25%), Postives = 131/214 (61.21%), Query Frame = 2
Query:  191 KMKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFF 829
            K   LF    + P +IV+  +D     N +   ++ K+ DK +E + K+++ +K IL G ++ EP +EA AQL  E +    L  LI  L  ++ E +KD TQ+  N+ R+Q+ ++    +Y+ ++  +L +L+ GYE   +AL  G MLRECIRH+ +A+ +L S   + FF Y++L  FDIA+DA ATFK+LLTRHK  VA+FL +NY+  F
Sbjct:    2 KKMPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYISSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIF 210          
BLAST of FC929169 vs. ExPASy Swiss-Prot
Match: MO25_DROME (Protein Mo25 OS=Drosophila melanogaster GN=Mo25 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 6.542e-35
Identity = 79/212 (37.26%), Postives = 133/212 (62.74%), Query Frame = 2
Query:  203 LFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSE-ACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT--DMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFF 829
            LF    ++PV++V+  ++ I     + +  + K E    ++ KN+  +K++LYG+S++EP ++   AQL+ E +  N L LLI  L +++ E +K    +  N+ R+Q+ ++    +Y+    ++L  L+AGYE+   ++AL+ G MLREC R++++A+ +L S    KFF Y+++  FDIA+DA +TFKELLTRHK   AEFL  NY+ FF
Sbjct:    3 LFGKSQKSPVELVKSLKEAI----NALEAGDRKVEKAQEDVSKNLVSIKNMLYGSSDAEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFNNVLRRQIGTRSPTVEYICTKPEILFTLMAGYEDAHPEIALNSGTMLRECARYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAEFLDANYDKFF 210          
The following BLAST results are available for this feature:
BLAST of FC929169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
MO25N_ARATH8.387e-9981.86Putative MO25-like protein At5g47540 OS=Arabidopsi... [more]
MO25M_ARATH8.982e-9378.60Putative MO25-like protein At4g17270 OS=Arabidopsi... [more]
MO25L_ARATH1.441e-7463.89MO25-like protein At2g03410 OS=Arabidopsis thalian... [more]
CAB39_HUMAN2.567e-3938.94Calcium-binding protein 39 OS=Homo sapiens GN=CAB3... [more]
CAB39_BOVIN2.567e-3938.94Calcium-binding protein 39 OS=Bos taurus GN=CAB39 ... [more]
CAB39_MOUSE3.352e-3938.94Calcium-binding protein 39 OS=Mus musculus GN=Cab3... [more]
MO25M_CAEEL5.718e-3939.44MO25-like protein 2 OS=Caenorhabditis elegans GN=m... [more]
CB39L_HUMAN1.274e-3840.19Calcium-binding protein 39-like OS=Homo sapiens GN... [more]
CB39L_MOUSE4.841e-3839.25Calcium-binding protein 39-like OS=Mus musculus GN... [more]
MO25_DROME6.542e-3537.26Protein Mo25 OS=Drosophila melanogaster GN=Mo25 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CH01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929169 ID=FC929169; Name=FC929169; organism=Citrus clementina; type=EST; length=829bp
ACAACTCATACAGCAAAATTAAATTCGAAAGCTGAAACCCTAAAGCCTAA
TTAGAAGAAGAAGATACACAATAGGAATCTGTGCGTCAAAGCCGAAAGCT
GAGGCGCTCTCAGCCTCGGCGAGTCAATCGGTCCAGCGCCTCTCGAGCTC
AGCCAGTTCAAGTTCGATTAACGAATTAGACCCTAACACAAAAATGAAGG
GACTTTTCAAATCCAAGCCTCGTACTCCCGTCGACATCGTCCGCCAAACT
CGGGATCTTATTATTTACGCCAATCGCAGCGCAGATGTTCGTGAATCGAA
GCGCGAAGACAAGATGGCAGAGTTATGTAAAAACATCAGGGAGTTAAAGT
CAATACTTTATGGCAATAGTGAATCTGAGCCAGTTTCAGAGGCATGTGCA
CAATTGACTGCAGAGTTCTTCAGGGAAAACACGTTACGGCTTTTGATAAC
TTGTCTTCCAAAGTTGAACTTGGAGGCAAGGAAAGATGCCACTCAGGTTG
TTGCTAATTTACAGAGGCAACAAGTTCACTCAAAGTTGATTGCCTCTGAC
TACTTAGAAGCAAACATAGATCTTTTGGATATTCTGATAGCTGGTTATGA
AAACACAGACATGGCTTTACATTATGGTGCTATGCTTAGGGAGTGTATTC
GTCATCAGAGTGTTGCAAGATATGTGTTGGAATCCCAGCACATGAAGAAG
TTTTTTGACTATATACAGCTTCCAAATTTTGACATTGCTGCAGATGCTGC
TGCAACTTTTAAGGAACTGTTGACAAGGCACAAATCCACTGTGGCCGAAT
TTCTTTCTAAGAATTATAACTGGTTTTTT
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