FC929174

Overview
NameFC929174
Unique NameFC929174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11287 contig Ccv1_Contig11287:21..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929174 vs. ExPASy Swiss-Prot
Match: SPG1_SCHPO (Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe GN=spg1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.828e-32
Identity = 68/141 (48.23%), Postives = 94/141 (66.67%), Query Frame = 1
Query:  337 DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTNATQAR 756
            D   + V++K+ ++GD  IGKTS +V YV G+  E S Q  G+N + KT+ ++   I FSIWD+GG     + +P+ C DAVAILFMFDL+ + TLNSI  WY +AR +N+TA+PILIGTK+D F+  P + Q     QAR
Sbjct:    3 DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYDHFMTFPREDQEEITKQAR 143          
BLAST of FC929174 vs. ExPASy Swiss-Prot
Match: TEM1_YEAST (Protein TEM1 OS=Saccharomyces cerevisiae GN=TEM1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.140e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  355 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ 732
            V +++ L+GD Q+GKTS +VKYV N  ++   Q  G+N + + + ++   I FSI D+GG     + +PIA   +  I+F+FDLT   TL+SI  WY +A   N +AIPIL+GTK+D  + L P+ Q
Sbjct:   19 VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGGQREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLNDSAIPILVGTKYDLLIDLDPEYQ 145          
BLAST of FC929174 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  349 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFD 702
            D V+ K  LLGD  +GKTSF+VKY   E       A  G+ L NK ++V G R+   IWD  G  R         +DA A+L ++D+T++ T ++I  W  E R++ Q   + +LIG K D
Sbjct:  187 DTVNHKTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKAD 307          
BLAST of FC929174 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = 1
Query:  307 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 702
            E S  FS  YD        K+ LLGD  +GKT F++++          +   G++  NK + V GAR+   IWD  G  R         +DA A+L ++D+T++ + ++I  W +E  ++ Q  + I L+G K D
Sbjct:   17 ERSPPFSPNYDLTG-----KVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKAD 146          
The following BLAST results are available for this feature:
BLAST of FC929174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SPG1_SCHPO5.828e-3248.23Septum-promoting GTP-binding protein 1 OS=Schizosa... [more]
TEM1_YEAST7.140e-2241.73Protein TEM1 OS=Saccharomyces cerevisiae GN=TEM1 P... [more]
RAB26_DROME5.480e-1438.02Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
RAB37_MOUSE1.492e-1131.11Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3CH07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929174 ID=FC929174; Name=FC929174; organism=Citrus clementina; type=EST; length=756bp
GGCACGAGGAAAATTTTTTAAAGAAACTATGATGCTGCTGCCGCTGCAAC
AGCAACAATAATGGCCAAAATAATCCATGAAGCTACTGAAAACATGACTC
AGCTTTGCAGAAGAGTTGTTCATGTGAATATTAGACGGAGTTTGTTTGAT
AGAGTGTCGATTTTCCGGAGGTTCTTTCGGTTTATTTGGGATAGGATTCT
TGTTTGTTCGATTGGGAAGCAGCCGGCAGTTAGGTACCAGAAGTTGACCC
GCCGGTCGTCGTCGGAGTCTTCTCCGGCGCCGGATACTATGGAGGCCGGC
CTTGTGGAGCTTTCCAGGACGTTTAGTAGTGGGTATGATACGGATTCGGA
CTTGGTTTCTTTGAAGATCAGTTTGTTGGGTGATTGCCAAATTGGCAAAA
CAAGCTTCGTGGTCAAGTATGTGGGAAATGAGCAAGAAAGAAGCTTGCAA
ATGGCAGGATTGAATCTGATAAATAAAACTTTGATGGTTCAAGGTGCCAG
AATTGCTTTTAGCATCTGGGATGTTGGAGGAGATAGCAGGTCATTTGATC
ATGTTCCAATTGCTTGTAAAGATGCAGTAGCAATTTTATTCATGTTTGAT
CTTACTAGCAGATGCACCCTTAACAGTATTGTTGGGTGGTACAGTGAAGC
CAGAAAGTGGAACCAGACAGCGATTCCCATATTGATAGGGACCAAATTTG
ATGATTTTGTGAGACTCCCACCAGATTTGCAATGGACTAATGCAACTCAG
GCGAGG
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