FC929177

Overview
NameFC929177
Unique NameFC929177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9287 contig Ccv1_Contig9287:11..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929177 vs. ExPASy Swiss-Prot
Match: KCO1_ARATH (Calcium-activated outward-rectifying potassium channel 1 OS=Arabidopsis thaliana GN=KCO1 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.345e-48
Identity = 106/197 (53.81%), Postives = 137/197 (69.54%), Query Frame = 3
Query:  225 MASNGANQPLL-SGFVDSTSQTNNKDA----PKRRRLRRCRSAPQTDVAALD---INEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKC 791
            M+S+ A  PLL +  +D+ +Q  N ++     ++RRLRR RSAP+ D    D   I+E         +F    PN +RV+++LA YL  G+L FY V  QI G KT+ ++D++YFCIVTMTTVGYGDLVPNS  S+LL+CAFVF+GM LVG  LS+AADYLV+KQE LLV+A H  Q  GPTDILKE+ TNK+RYKC
Sbjct:    1 MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKELHTNKLRYKC 197          
BLAST of FC929177 vs. ExPASy Swiss-Prot
Match: KCO6_ARATH (Probable calcium-activated outward-rectifying potassium channel 6 OS=Arabidopsis thaliana GN=KCO6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.886e-16
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  318 LRRCRSAPQTDVAA---LDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHR 725
            L R ++AP   V       I +KD T  S S+        ++    L  YL  G L ++         +T+ ++D +YFCIVTM T+GYGD+ PNSVV+KL S  FV  G G + + LS    Y++D QE  ++ +  R
Sbjct:  118 LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVV-------RQAFALLVVYLSLGVLIYWLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKR 249          
BLAST of FC929177 vs. ExPASy Swiss-Prot
Match: KCO5_ARATH (Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic OS=Arabidopsis thaliana GN=KCO5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.534e-15
Identity = 53/182 (29.12%), Postives = 91/182 (50.00%), Query Frame = 3
Query:  270 DSTSQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVN-SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKAL--------HRYQKVGPTDILKEIETNKVRYK 788
            DS S   N+   + R L R R+AP   V   D+  K       S   K     ++ +  L  YL  G +S Y+ N     G++T+ ++D++YFCIVTM T+GYGD+ P +  +K+ +  FV  G G + + LS   +Y++D QE +++  +        H + +    D + + E  ++R +
Sbjct:   68 DSDSDETNRFLSQTRPLHRSRTAPAM-VIIKDLRTKPPETKKPSPVSKSI--IRQAIFLLIVYLTLG-VSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMRIR 245          
BLAST of FC929177 vs. ExPASy Swiss-Prot
Match: KCO2_ARATH (Probable calcium-activated outward-rectifying potassium channel 2 OS=Arabidopsis thaliana GN=KCO2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.436e-13
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  432 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQE 698
            + +  L  YL  G L ++         +T+ ++D++YFCIVTM T+GYGD+ P+SVV+KL S  FV  G G + + LS    Y++D QE
Sbjct:  148 QAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQE 236          
The following BLAST results are available for this feature:
BLAST of FC929177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
KCO1_ARATH2.345e-4853.81Calcium-activated outward-rectifying potassium cha... [more]
KCO6_ARATH6.886e-1635.25Probable calcium-activated outward-rectifying pota... [more]
KCO5_ARATH1.534e-1529.12Probable calcium-activated outward-rectifying pota... [more]
KCO2_ARATH1.436e-1340.45Probable calcium-activated outward-rectifying pota... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3CH11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929177 ID=FC929177; Name=FC929177; organism=Citrus clementina; type=EST; length=838bp
GGCACGAGGCAACACACTCACTTCATAAAGTTTCTTCCTTGATCTGGGGG
TGGTCTTGTGTCAGCTTGATAATGAACTCTAGAAGAATATAAACTGATTT
TCCACTGGCAATTATGTTTATAATGTAAAGTTAACTCCCCAGAAGTATTG
TATATCATCTGATATCCTTGACAGTGACTGTGTTCATAATTCTAAAGGTC
TGAGTCCGCTTTTGCTATCCTCTAATGGCCTCCAATGGTGCAAATCAGCC
GCTGCTCTCAGGATTTGTTGATTCAACGTCTCAAACAAATAATAAAGATG
CTCCCAAGAGAAGAAGGCTTCGTCGGTGTAGAAGTGCTCCCCAGACTGAT
GTTGCTGCTCTAGACATAAATGAAAAAGACTCAACTCACCTTTCTGAGTC
CCTTTTTGGCAAACCCCGCCCAAATTTTAAGAGGGTACTTGTCTACCTGG
CTGCCTACCTTGGTGGGGGGTCATTATCCTTCTATGCTGTCAACAGTCAA
ATCGAAGGACTAAAAACCAATGAAATTCTAGATTCTATTTATTTCTGCAT
CGTGACAATGACCACTGTAGGGTATGGAGACCTTGTGCCTAATAGTGTCG
TTTCGAAACTACTTTCCTGTGCTTTTGTTTTCACAGGGATGGGTCTAGTT
GGTCTGTTTCTGAGCAAAGCAGCCGACTATCTGGTCGACAAGCAGGAAAT
ATTGCTGGTTAAAGCCCTACACAGGTATCAAAAAGTTGGCCCGACTGATA
TTCTAAAGGAGATTGAAACCAACAAAGTGAGATACAAATGCATCATCATG
TTGGTCCTTGAGTTGGTTCTCATTCTCGTTGGGACCAT
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