FC929209

Overview
NameFC929209
Unique NameFC929209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929209 vs. ExPASy Swiss-Prot
Match: LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27
Identity = 55/100 (55.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:   48 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGA 347
            K   +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q   A
Sbjct:    4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103          
BLAST of FC929209 vs. ExPASy Swiss-Prot
Match: LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27
Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = 3
Query:   48 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQ 335
            K   +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RD DD  K T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct:    4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99          
BLAST of FC929209 vs. ExPASy Swiss-Prot
Match: LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.098e-26
Identity = 54/90 (60.00%), Postives = 73/90 (81.11%), Query Frame = 3
Query:   60 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPF 329
            +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RDA+DPL TTD+ R LGL+VCRG++VM+V PT+G + I NP+
Sbjct:    8 KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97          
BLAST of FC929209 vs. ExPASy Swiss-Prot
Match: LSM7_SCHPO (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe GN=lsm7 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.078e-22
Identity = 50/94 (53.19%), Postives = 73/94 (77.66%), Query Frame = 3
Query:   60 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPD 341
            RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+ +D  K T   R+LGL+V RGT ++L++P DG++EI NPF+Q +
Sbjct:   21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113          
BLAST of FC929209 vs. ExPASy Swiss-Prot
Match: LSM7_YEAST (U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces cerevisiae GN=LSM7 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.358e-16
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 3
Query:   60 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT---TDQTRQLGLIVCRGTAVMLVSPTDGTD 311
            ++E +LDLAK+ D  ++VKL GG+ V G LKGYDQL+NLVLD+ VE++ + DD   T   +   R+LGL V RGT ++ +S  +G+D
Sbjct:   23 KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRGTILVSLSSAEGSD 109          
The following BLAST results are available for this feature:
BLAST of FC929209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM7_HUMAN1.898e-2755.00U6 snRNA-associated Sm-like protein LSm7 OS=Homo s... [more]
LSM7_MOUSE5.522e-2756.25U6 snRNA-associated Sm-like protein LSm7 OS=Mus mu... [more]
LSM7_DICDI2.098e-2660.00Probable U6 snRNA-associated Sm-like protein LSm7 ... [more]
LSM7_SCHPO1.078e-2253.19U6 snRNA-associated Sm-like protein LSm7 OS=Schizo... [more]
LSM7_YEAST3.358e-1648.28U6 snRNA-associated Sm-like protein LSm7 OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2AC12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929209 ID=FC929209; Name=FC929209; organism=Citrus clementina; type=EST; length=751bp
GGCACGAGGCGCGCGTTTCTTTCAATTTAGGGTTCTTGAAATCACTCAAG
ATGTCAGGAAGAAAAGAAACAGTTCTGGATTTGGCAAAGTTTGTAGACAA
AGGTGTTCAAGTGAAGCTCACTGGTGGTAGACAAGTGACCGGGACTCTAA
AAGGGTATGATCAGTTGCTAAATCTTGTCCTGGATGAAGCTGTAGAGTTT
CTAAGAGATGCTGATGATCCATTGAAGACTACTGATCAGACCAGGCAACT
TGGCCTAATAGTGTGTAGGGGAACTGCTGTGATGCTTGTGTCACCAACTG
ATGGTACAGATGAGATTGCCAACCCTTTCATGCAGCCAGATGGAGCCTGA
TATGTCTTGTTTCTCTTTTGAAATTGCTAACATGGATCTGTATGCCCTTT
TGTTGCCTGCCGGTCATTCTTCTTTACAAATGCCTTATTGCAAAATAGAT
AATTTCTTATGAAGTTTGTTTTAGTCTACTCTTAGCCCGTGAATCTTTCT
ATTGTATGAATTTAAGCAGTAAATCTGTAACCTCTTTGTGCTTAAGTTGA
AATGTGCATTTATTTGGAATATCAGTTCTCGAGTTATATTGCGTGCTGGC
GTTGGTTTCATATCAACCTATATCAAGCTGACCAGAGGGCGCATGAAGCA
ATATTGGCATAAGAAAGTTTTTTATGTCTCTGTTGAACGCAGGTGTTTGT
TTTATGAATTGGTTTTCACTTCTTGAGAAAGGAGAAATTGTATTCGGTCT
T
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