FC929209
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929209 vs. ExPASy Swiss-Prot
Match: LSM7_HUMAN (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7 PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.898e-27 Identity = 55/100 (55.00%), Postives = 76/100 (76.00%), Query Frame = 3 Query: 48 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGA 347 K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++RD DD K T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q A Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103
BLAST of FC929209 vs. ExPASy Swiss-Prot
Match: LSM7_MOUSE (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27 Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = 3 Query: 48 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQ 335 K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++RD DD K T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99
BLAST of FC929209 vs. ExPASy Swiss-Prot
Match: LSM7_DICDI (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.098e-26 Identity = 54/90 (60.00%), Postives = 73/90 (81.11%), Query Frame = 3 Query: 60 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPF 329 +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+ EF+RDA+DPL TTD+ R LGL+VCRG++VM+V PT+G + I NP+ Sbjct: 8 KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97
BLAST of FC929209 vs. ExPASy Swiss-Prot
Match: LSM7_SCHPO (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe GN=lsm7 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.078e-22 Identity = 50/94 (53.19%), Postives = 73/94 (77.66%), Query Frame = 3 Query: 60 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPD 341 RKE++LDL+++ D+ +Q TGGRQ+TG LKG+DQL+NLVLD+ E LR+ +D K T R+LGL+V RGT ++L++P DG++EI NPF+Q + Sbjct: 21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113
BLAST of FC929209 vs. ExPASy Swiss-Prot
Match: LSM7_YEAST (U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces cerevisiae GN=LSM7 PE=1 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.358e-16 Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 3 Query: 60 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT---TDQTRQLGLIVCRGTAVMLVSPTDGTD 311 ++E +LDLAK+ D ++VKL GG+ V G LKGYDQL+NLVLD+ VE++ + DD T + R+LGL V RGT ++ +S +G+D Sbjct: 23 KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRGTILVSLSSAEGSD 109 The following BLAST results are available for this feature:
BLAST of FC929209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC929209 ID=FC929209; Name=FC929209; organism=Citrus clementina; type=EST; length=751bpback to top |