FC929214

Overview
NameFC929214
Unique NameFC929214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15030 contig Ccv1_Contig15030:1..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929214 vs. ExPASy Swiss-Prot
Match: APH1_ARATH (Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.186e-50
Identity = 97/149 (65.10%), Postives = 110/149 (73.83%), Query Frame = 3 
Query:    6 EALDAFADRVGKPRLFLTDKMQIXXXXXXXXXXXXXXFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGXXXXXXXXXXXXXHCGKMVWRRLTAS 452
            + LD+FADR+ +PRLFLTDK+QI              FFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF GYA+GN  DQ  VPV+HL AGM+TLVNFAS GCV+G             HCGKMVW+RL  S
Sbjct:   94 DVLDSFADRISRPRLFLTDKLQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFEGYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLLES 242
The following BLAST results are available for this feature:
BLAST of FC929214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APH1_ARATH2.186e-5065.10Gamma-secretase subunit APH1-like OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3DA06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929214 ID=FC929214; Name=FC929214; organism=Citrus clementina; type=EST; length=667bp
GGCACGAGGCGTTGGATGCTTTTGCTGACAGAGTTGGAAAACCACGCTTA
TTTCTGACTGATAAGATGCAAATTGCTCTTGCTGGTGGATTAGGCCATGG
TGTGGCCCATGCTGTGTTTTTTTGTCTTAGCCTGTTAACTCCAGCATTTG
GTCCAGCTACATTTTATGTTGACAGATGCCCCCAGATGCCCTTTTTTCTT
ATTTCTGCAATCATTGCTCTTGCATTTGTTACAATTCACACTTTCTCAAT
GGTCATTGCATTTAATGGGTATGCTGAAGGGAATACAACGGACCAGTATT
TTGTTCCTGTTGTTCATCTTGTGGCCGGAATGGTGACATTGGTAAATTTT
GCATCTGGTGGTTGTGTCGTTGGGATTCCTCTGCTCTATATCCTGGCAAG
CTTGATCCTGTTACACTGTGGGAAAATGGTGTGGAGAAGATTAACAGCAA
GCTGAAGCATGCAGGGTAATTCTTAGTGATCCATAGCAATTGGAAAGTCA
CTCTCAAAATTTATAGCTCAGCTGAACATGTAATGTACTACACAAATGTA
TCTTGGAAGGTTCTCAAAACCATTTATTTTGTGAACTGACATCCATACTA
ATTCAATTCAAACGGCTGTTTAAATTTNAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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