FC929233

Overview
NameFC929233
Unique NameFC929233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length839
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9272 contig Ccv1_Contig9272:2..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929233 vs. ExPASy Swiss-Prot
Match: ATM_ARATH (Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.260e-25
Identity = 73/165 (44.24%), Postives = 99/165 (60.00%), Query Frame = -1 
Query:  291 RYKFNNDRGNNNGESSVTTLILTFAPGVSMPSKEFLVATFSRFGPLKESETQLSNDSGIAEVVFMRGADAGEAIRSLETNNCFGPILVSYTLR----PVEGSRTPAKPADS----VSQPGEAP-PLDFIRQNLEMMTSMLKNSGDKLSPEMKAKLESEIKGLLKR 758
            R +   +   N     +T L L F+  VSMPS++ L +TFS FGPL  SET +S +   A+V F+  ADA EA++SLE  N FG  LV++ L+     V+ +  P  P  S    V +P   P  +D +RQNL MMT+ML+ SGD LS E KAKL+SEI GLL++
Sbjct:  672 RRRRKKEESPNGLTRGITILFLKFSSQVSMPSRDDLTSTFSAFGPLDSSETHVSEEFSGAQVAFVSSADAIEAVKSLEKANPFGETLVNFRLQQKLITVQRNIAPRMPVISHVSPVPKPNNIPTSMDAMRQNLLMMTAMLEKSGDSLSRETKAKLKSEITGLLEK 836
The following BLAST results are available for this feature:
BLAST of FC929233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATM_ARATH1.260e-2544.24Serine/threonine-protein kinase ATM OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3DB01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929233 ID=FC929233; Name=FC929233; organism=Citrus clementina; type=EST; length=839bp
AGGAGAAGATTACAGTTTTTTAATTAGAAAGGAAAAGCAAACCCAACGAT
TACAGATGATGTTCCATTGCTTGTACACTCAGTACGAGACAAGCTAAATG
GGGGTTCTCATGCTACGACATCTGTCAACATAGAGATACAAAATAACAGC
TAATACAGACCTCAGAACCGGGAACTGTAATGATATCTAGTCTCTACTGA
AAGGGCCACTACATCAATAAACAACCTAAATAGAGAACCTACATCTTAAA
ACTCTTACTAGGAAGAGGAAGAACTGGGCATGGAGCTGACCCTTTTGAGA
AGGCCTTTAATTTCACTCTCCAATTTGGCTTTCATCTCTGGAGAAAGTTT
ATCCCCGGAGTTCTTTAGCATTGATGTCATCATCTCAAGATTCTGCCGTA
TGAAGTCAAGGGGAGGTGCCTCGCCAGGTTGAGAAACTGAATCGGCAGGC
TTTGCTGGAGTCCTAGATCCTTCCACAGGACGAAGAGTATAACTTACCAG
GATTGGACCAAAACAGTTATTTGTCTCTAAACTCCGAATAGCTTCTCCAG
CATCTGCACCTCTCATGAAAACAACCTCCGCGATACCCGAATCATTTGAC
AACTGTGTTTCTGATTCCTTCAAGGGCCCAAACCTGGAAAATGTTGCAAC
CAAAAATTCTTTTGAAGGCATGGAAACTCCAGGGGCAAATGTCAAGATAA
GAGTAGTCACAGAAGATTCTCCATTATTATTCCCTCTGTCGTTATTAAAT
TTATATCTAACATCCTGGAAGCAAATTTATTACTTCGCTTGCCAGGAGTA
GCTCCCCCTTTTCTCTTCCTCTTCTTCCTCTCAAGTTTG
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