FC929259

Overview
NameFC929259
Unique NameFC929259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length785
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929259_ssr289 microsatellite FC929259_ssr289:289..300. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig16 contig Ccv1_Contig16:604..1388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929259 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.853e-37
Identity = 70/139 (50.36%), Postives = 95/139 (68.35%), Query Frame = 1
Query:  367 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFG 783
            S +L+PG+  D +L+CL     +DY S+  +N+    LI+SG +Y LR+  G +EHWVY  C    WEAFDP  K+WM LP +P +ECF +ADKESLAVG++LLVFG E+  + I++YSL+  SW   + MN PRCLFG
Sbjct:   68 SGTLIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVYFSCHLNEWEAFDPRSKRWMHLPSMPQNECFRYADKESLAVGTDLLVFGWEVSSYVIYRYSLLTNSWSTAKSMNMPRCLFG 206          
BLAST of FC929259 vs. ExPASy Swiss-Prot
Match: FBK29_ARATH (F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.018e-32
Identity = 64/132 (48.48%), Postives = 85/132 (64.39%), Query Frame = 1
Query:  388 LVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFG 783
            L  +  LNCLA    SD+ S+   N+ F  LIK   LY LR+  GIVEHW+Y  C    WEA+DP   +W+ +PK+  +ECF  +DKESLAVG+ELLVFG+E+    I++YS++  +W     MN PRCLFG
Sbjct:   99 LDQNALLNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLRRAKGIVEHWIYFSCRLLEWEAYDPNGDRWLRVPKMTFNECFMCSDKESLAVGTELLVFGKEIMSHVIYRYSILTNTWTSGMQMNVPRCLFG 230          
BLAST of FC929259 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.786e-31
Identity = 69/149 (46.31%), Postives = 92/149 (61.74%), Query Frame = 1
Query:  340 NDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF-DFAIWKYSLVFRSWMKCEGMNHPRCLFG 783
            ND       S SL+  +  D +++CL     SDY S+  +N+ F  L+KSG +Y LR+Q G VEHWVY  C    W AFDP++++WM LP +P    F  ADKESLAVG++LLV G++ F    I++YSL+  SW     MN PRCLFG
Sbjct:  105 NDNGGDSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQNGFVEHWVYFSCQLLEWVAFDPVERRWMQLPTMPSSVTFMCADKESLAVGTDLLVLGKDDFSSHVIYRYSLLTNSWSSGMKMNSPRCLFG 253          
BLAST of FC929259 vs. ExPASy Swiss-Prot
Match: FBK70_ARATH (F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  379 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLF 780
            +P LV ++ +  LA     +Y  L  +NK F +L+KS  ++ +R++ G+VE  V+++      W  FD        LP++P D CF H DKESL  G+ L+V G+E    A+W+Y L    W K   M  PR LF
Sbjct:   71 VPQLVYELEVEILARVPRFEYWKLKLLNKGFSRLLKSDEIFKVRRERGVVEPSVFMLSSGDTCWTMFDKGFGNCQKLPELPSDICFLHGDKESLCAGTHLIVTGKEEKSIALWRYELETSKWFKGPAMITPRILF 205          
BLAST of FC929259 vs. ExPASy Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  376 LLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPR----GWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFG 687
            LLPGL DD+A+ CL     +++  L  + KR+++L    + Y  RK LG+ E WVY+    R     W  FDP+ + W  LP +P +  ++ A     AV  G  L +FG
Sbjct:   78 LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPRE--YSEAVGFGCAVLSGCHLYLFG 185          
The following BLAST results are available for this feature:
BLAST of FC929259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FBK15_ARATH4.853e-3750.36F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
FBK29_ARATH8.018e-3248.48F-box/kelch-repeat protein At1g74510 OS=Arabidopsi... [more]
SKI11_ARATH1.786e-3146.31F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
FBK70_ARATH1.468e-1736.30F-box/kelch-repeat protein At3g27150 OS=Arabidopsi... [more]
FBK22_ARATH5.974e-1135.45F-box/kelch-repeat protein At1g55270 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3DC08RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929259 ID=FC929259; Name=FC929259; organism=Citrus clementina; type=EST; length=785bp
GAGAGATGGTTATAAATGAGTCATGTGCTAAGTTTTATGGAAAGAATATA
TAGGCGGAGGTTCATTGTGTGCAAAGATCGGAATTTGTTTTCTGGTTATT
GGGAGCGTCATTGAGAATTGTGGGTTGACACTTTCTTTTATCTTTTTAAA
TTTTAATCAAGATTGACTTTTTTTTTTTTATAGAAATTTTGCTTGATTTT
GTTGGATTATAGGAAAAGAATTTTTTTTCTCCCTTTTAACATGATAAAGA
AAGCGCGTTTGGATGATATTATGGAGGAAGTAGAAAAGGAAGAAGAAGAA
GCAGCTAGTTTATCAGTAGTGAGTTGGAAAGCGGGAGTGAATGATGGTTG
TTGTCGGATTGGACCAAGTGATTCACTTCTCCCTGGTCTTGTTGATGATG
TTGCTTTGAACTGTCTTGCTTTTGCATGTACATCCGACTATGCATCATTG
TTATTTATAAATAAGAGGTTTCATAAGTTAATCAAGAGTGGGTATTTGTA
TGGGTTAAGGAAGCAATTGGGTATTGTGGAGCATTGGGTCTACTTGGTTT
GTGATCCACGGGGTTGGGAGGCATTCGATCCAATGAAAAAGAAGTGGATG
GCTTTGCCTAAGATCCCTTGTGATGAGTGTTTCAACCATGCAGATAAAGA
GTCCTTGGCTGTGGGTAGTGAATTGTTGGTTTTTGGGCGTGAATTGTTTG
ATTTTGCAATTTGGAAGTATAGCTTGGTTTTCCGTAGTTGGATGAAGTGT
GAGGGAATGAACCACCCTCGTTGCTTGTTTGGCTC
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