FC929281

Overview
NameFC929281
Unique NameFC929281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1735..2174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929281 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.002e-20
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2
Query:    2 TTVIKALATCGTLALAEMMKNGMAHDLSWKGPSKKWEETLLNLKVAGREPGIDGEQIAPLAKENVATP 205
            TTV +ALA  G++A  EM++N MA DLSWKGP+K WE+ LL+L V+G EPG+DGE+IAPLAKENVATP
Sbjct:  541 TTVERALAAYGSVAYKEMIQNCMAQDLSWKGPAKNWEKMLLSLGVSGSEPGVDGEEIAPLAKENVATP 608          
BLAST of FC929281 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.615e-20
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 2
Query:    2 TTVIKALATCGTLALAEMMKNGMAHDLSWKGPSKKWEETLLNLKVAGREPGIDGEQIAPLAKENVATP 205
            TTV +ALA  GTLA  EM+KN M+ +LSWKGP+K WE  LL+L VAG EPG++G++IAPLAKENVATP
Sbjct:  541 TTVGRALAMYGTLAFTEMIKNCMSQELSWKGPAKNWETVLLSLGVAGSEPGVEGDEIAPLAKENVATP 608          
BLAST of FC929281 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.415e-20
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 2
Query:    2 TTVIKALATCGTLALAEMMKNGMAHDLSWKGPSKKWEETLLNLKVAGREPGIDGEQIAPLAKENVATP 205
            TTV +ALA  GTLA AEM+KN M+ +LSWK P+KKWE  LL L  +G EPG++GE+IAPLAKENVATP
Sbjct:  540 TTVARALAVYGTLAFAEMIKNCMSEELSWKEPAKKWETLLLGLGASGSEPGVEGEEIAPLAKENVATP 607          
BLAST of FC929281 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 2
Query:    2 TTVIKALATCGTLALAEMMKNGMAHDLSWKGPSKKWEETLLNLKVAGREPGIDGEQIAPLAKENVATP 205
            TT+ +A+   GT A  EM+KN M  DLSWKGP+K WE  LL+L VAG EPGI+GE+IAPLAKENVA P
Sbjct:  541 TTLKRAIKVVGTPAYEEMVKNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGIEGEEIAPLAKENVAAP 608          
BLAST of FC929281 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.197e-18
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 2
Query:    5 TVIKALATCGTLALAEMMKNGMAHDLSWKGPSKKWEETLLNLKVAGREPGIDGEQIAPLAKENVATP 205
            TV +AL T  T AL EM+ N MA DLSWKGP++ WE+ LL+L+V G EPG +GE+IAPLAKENV TP
Sbjct:  542 TVARALGTYATAALREMILNCMAQDLSWKGPARMWEKMLLDLEVTGSEPGTEGEEIAPLAKENVPTP 608          
BLAST of FC929281 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.175e-18
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 2
Query:    2 TTVIKALATCGTLALAEMMKNGMAHDLSWKGPSKKWEETLLNLKVAGREPGIDGEQIAPLAKENVATP 205
            TT+ +A+   GT A  EM++N M  DLSWKGP+K WE  LL+L VAG EPG++GE+IAPLAKENVA P
Sbjct:  538 TTLQRAIKVVGTPAYEEMVRNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGVEGEEIAPLAKENVAAP 605          
BLAST of FC929281 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.301e-18
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 2
Query:    2 TTVIKALATCGTLALAEMMKNGMAHDLSWKGPSKKWEETLLNLKVAGREPGIDGEQIAPLAKENVATP 205
            TT+ +A+   GT A  EM++N M  DLSWKGP+K WE  LL L VAG EPG++GE+IAPLAKENVA P
Sbjct:  539 TTLKRAIKIVGTPAYNEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSEPGVEGEEIAPLAKENVAAP 606          
BLAST of FC929281 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.534e-17
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 2
Query:    8 VIKALATCGTLALAEMMKNGMAHDLSWKGPSKKWEETLLNLKVAGREPGIDGEQIAPLAKENVATP 205
            V +A+A  GT A+ EM+KN M  D SWKGP++ WE+ LL+L VAG E G +GE+IAPLAKENVATP
Sbjct:  545 VTRAVAVYGTSAMQEMVKNCMDQDFSWKGPARLWEKVLLSLNVAGSEAGTEGEEIAPLAKENVATP 610          
BLAST of FC929281 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.874e-17
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    2 TTVIKALATCGTLALAEMMKNGMAHDLSWKGPSKKWEETLLNLKVAGREPGIDGEQIAPLAKENVATP 205
            TT+ +A+   GT A  EM+KN M  DLSWKGP+K WE+ LL L V G EPGI GE+IAPLA ENVA P
Sbjct:  536 TTLKRAVKVVGTPAYQEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLAMENVAAP 603          
BLAST of FC929281 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.028e-16
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 2
Query:    2 TTVIKALATCGTLALAEMMKNGMAHDLSWKGPSKKWEETLLNLKVAGREPGIDGEQIAPLAKENVATP 205
            + V +AL    T     M++N MA DLSWKGP+KKWEE LL+L V G +PGI+GE+IAPLAK+NVATP
Sbjct:  498 SNVTRALKQYRTPVFHAMVQNCMAQDLSWKGPAKKWEEALLSLGVEGSQPGIEGEEIAPLAKQNVATP 565          
The following BLAST results are available for this feature:
BLAST of FC929281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SSG1_ANTMA2.002e-2067.65Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA2.615e-2067.65Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU3.415e-2067.65Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI1.435e-1864.71Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES3.197e-1864.18Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE4.175e-1861.76Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA9.301e-1861.76Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH3.534e-1762.12Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_HORVU7.874e-1761.76Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU1.028e-1660.29Granule-bound starch synthase 1b, chloroplastic/am... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DD11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929281 ID=FC929281; Name=FC929281; organism=Citrus clementina; type=EST; length=440bp
CACAACCGTCATAAAAGCTCTTGCAACCTGTGGTACTCTTGCTTTGGCTG
AAATGATGAAAAATGGAATGGCTCATGATCTTTCATGGAAAGGACCATCT
AAAAAATGGGAGGAGACCCTACTTAACCTGAAAGTTGCTGGTAGAGAACC
TGGAATTGACGGCGAACAAATTGCTCCTCTTGCCAAGGAAAATGTGGCCA
CTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACCGCATAC
ATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAAGAAATAACATA
GGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTGGAGTTG
AGACATTAGTGTTTACCTTGTATAATGAAATATTAAGTTCTGTTTTACAG
TTTTGTAAAAGGGCTCTGACGGCTGTCGCCACTCTCCTGA
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