FC929286

Overview
NameFC929286
Unique NameFC929286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929286_ssr386 microsatellite FC929286_ssr386:386..400. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10288 contig Ccv1_Contig10288:28..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929286 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.809e-35
Identity = 69/85 (81.18%), Postives = 79/85 (92.94%), Query Frame = 1
Query:   49 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 303
            MASGDVE+RCFVGGLAWAT D +L  AF  YGD+++SKIINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC929286 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.173e-34
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   49 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 303
            MAS DVE+RCFVGGLAWAT D +L  AF  YG++L+SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC929286 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.412e-34
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 1
Query:   61 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 303
            +VE+RCFVGGLAWAT D SL +AF  +GDI +SKIINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of FC929286 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.297e-33
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   49 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 303
            MAS DVE+RCFVGGLAWAT + SL  AF  +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC929286 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.531e-31
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 1
Query:   49 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 303
            MA+ DVE+RCFVGGLAWAT++ SL  AF +YG+IL+SK+I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC929286 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.989e-30
Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 1
Query:   61 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 303
            DVE+RCFVGGL WAT D SL  AF  YGD+++SKII DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:    3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of FC929286 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 1
Query:   61 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 303
            +VE+RCFVGGLAWAT D  L   F  +GD+++SKIINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of FC929286 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.659e-30
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1
Query:   61 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 303
            +VE+RCFVGGLAWAT D+ L   F  +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of FC929286 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 1
Query:   49 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 303
            MA+ DVE+RCFVGGLAWAT + +L +AF  +G +++SK+I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC929286 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  112 SSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 303
            +SLH AF  YG++LESKII DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of FC929286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
GRP7_ARATH1.809e-3581.18Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP1_SINAL1.173e-3481.18Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA3.412e-3483.95Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP2_SINAL1.297e-3378.82Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE3.531e-3174.12Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU2.989e-3075.31Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH5.099e-3074.07Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA6.659e-3072.84Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SORBI1.136e-2969.41Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI4.326e-2176.56Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2AG04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929286 ID=FC929286; Name=FC929286; organism=Citrus clementina; type=EST; length=731bp
GATTTTTCTTGTAATTTTTTCTTAGTCCCCATTTTAAGTTTTCTCCTAAT
GGCTTCAGGCGATGTCGAGTTTAGGTGCTTCGTAGGCGGCCTGGCCTGGG
CCACCACTGACAGCTCTCTCCATGAGGCCTTCGGTGCTTACGGCGATATC
CTTGAATCGAAGATAATTAACGATCGCGAGACTGGAAGATCCAGAGGATT
TGGATTCGTTACCTTCCGCGATGAGAAGTCGATGAGGGACGCGATCGAAG
GCATGAACGGCCAGAATCTCGACGGCCGTAACATCACAGTCAACGAGGCC
CAGTCCCGCGGAAGCGGTGGCGGTGGCGGTGGTGGTTACGGAAGCCGCGG
CGGTGGCGGATATGGAGGTGGTGGACGCCGTGAAAGTGGTGGTGGTGGTG
GATACGGTGGGAGCCGCGGATACGGAGGTGGCGGTGGTGGAGGATATGGT
GGCCGCCGTGAAGGTGGTTACAGCCGTGATGGTGGATATGGCGGTGATGG
TGGTTCCCGATACTCAAGGAGCGGTGCTTCTGATGGCGGCAGCTGGAGGA
ATTAGTGTTGTTTAGGATAAATTAGGAGCTATGTTATGGTTTCGTGTTTT
GATATTTTCCTTGGGTTATGTTGTGTCGTTTTGATCGGTTCCTGTTATCC
TGTGTTGTTTCGATCTCCCTGTTTGGTTAATTGTTTGAAAAAAAAATGAA
ATGAATTACAGTTCTTTTCAAAAAAAAAAAA
back to top