FC929289

Overview
NameFC929289
Unique NameFC929289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9273 contig Ccv1_Contig9273:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929289 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.708e-19
Identity = 70/209 (33.49%), Postives = 104/209 (49.76%), Query Frame = 3
Query:   27 FSYCLPSTQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQL--QASGFA------KGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSI-LDTCFNL-SAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAGEDCSS 623
            FSYC+     +  S +L+LG  ++     +P   T +I + Q+ TFY + L G+S+G  +L    S FA       GGI+IDSGT +T    + Y +++ EF+ Q +  P   G S   D CF   S    + IP   M F+G     +++    YF+      +CLA+ S S      I GN QQ+N  V+YDT NS + FA   C +
Sbjct:  237 FSYCMTPIGSSTPS-NLLLGSLANSVTAGSP--NTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQIN-LPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGG---DLELPSENYFISPSNGLICLAMGSSS--QGMSIFGNIQQQNMLVVYDTGNSVVSFASAQCGA 436          
BLAST of FC929289 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.309e-16
Identity = 66/214 (30.84%), Postives = 102/214 (47.66%), Query Frame = 3
Query:    6 SEIFGGLFSYCLPSTQDAGASGSLILGGNSSVFKNSTPITYTNMIPNPQLATFYILNLTGISIGGKQL-------QASGFAKGGILIDSGTVITRLPPSIYSALKAEFLKQFSGFPSAPGFSILDTCFNL-SAYQEVNIPLVKMEFEGNAEMTVDVTGIVYFVKSDASQVCLALASLSYEDETGIIGNYQQKNQRVIYDTKNSQLGFAGEDCSS 623
            S++  G FSYC+ S   +  S +L LG  +S     +P T   +I +    T+Y + L GI++GG  L       Q      GG++IDSGT +T LP   Y+A+   F  Q +        S L TCF   S    V +P + M+F+G   + +    I+  +      +CLA+ S S +    I GN QQ+  +V+YD +N  + F    C +
Sbjct:  231 SQLGVGQFSYCMTSYGSSSPS-TLALGSAASGVPEGSPST--TLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGV-LNLGEQNIL--ISPAEGVICLAMGS-SSQLGISIFGNIQQQETQVLYDLQNLAVSFVPTQCGA 437          
The following BLAST results are available for this feature:
BLAST of FC929289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR1.708e-1933.49Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR2.309e-1630.84Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2AG09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929289 ID=FC929289; Name=FC929289; organism=Citrus clementina; type=EST; length=825bp
AAACTTCTGAGATTTTTGGAGGACTTTTTTCATATTGTTTGCCTTCAACA
CAAGATGCTGGAGCTTCAGGATCTTTAATTCTTGGTGGGAATTCTTCAGT
TTTTAAAAATTCAACTCCTATCACATACACTAACATGATTCCAAATCCCC
AGCTGGCCACTTTCTATATTCTGAATCTCACTGGAATCAGCATTGGTGGG
AAGCAATTACAGGCCTCAGGTTTTGCTAAAGGAGGGATTTTAATTGATTC
CGGGACAGTTATAACCCGGCTTCCACCATCGATTTACAGTGCATTGAAGG
CAGAGTTTCTGAAGCAATTTTCAGGATTTCCTTCAGCTCCAGGTTTTTCA
ATCCTGGATACTTGCTTTAACCTCAGTGCTTATCAAGAAGTGAACATTCC
TTTGGTAAAAATGGAATTTGAGGGAAATGCCGAGATGACTGTTGATGTAA
CTGGAATCGTTTATTTTGTTAAAAGTGATGCATCTCAGGTTTGCTTGGCT
CTGGCAAGTCTCTCATATGAAGATGAAACTGGTATTATTGGGAATTATCA
GCAGAAAAACCAGAGGGTGATATATGATACCAAGAATTCTCAGTTGGGAT
TTGCGGGAGAAGATTGCAGTTCAATGTGACGATCAAACAATGTTACAACA
GGAATTTTTTATGCTGCAAAGTAAATTAAAGCCAAGTGGTTTTGGCAAGA
GTACGCGTTGATTATGTTAATATTATGTAAGTAATATTCACCCCCCCCCC
CCCAAAAAATGATTGGGGAAGGTAAAGAATATGTGAAAGGGAGTTATGAT
TTTCTAATTGTGTGTAATATTGCTA
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