FC929331

Overview
NameFC929331
Unique NameFC929331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929331_ssr138 microsatellite FC929331_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9264 contig Ccv1_Contig9264:11..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929331 vs. ExPASy Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:  490 KIGARVKVKVPLKVYHVPRVPELDLSGMEGVLKQYVGVWKGKKISANLPYKVAFVTEIEG--RTVKFF 687
            KIG RV+V  PL+VYHV + P+LD+ GMEGV+KQYV VWKGK+++AN P+KV F   +EG  + V+FF
Sbjct:   17 KIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFELAVEGQPKPVRFF 84
[Close]
BLAST of FC929331 vs. ExPASy Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:  382 ISCEVAVKSNNSTASVGLEXXXXXXXXXXDDGFDESKIGARVKVKVPLKVYHVPRVPELDLS-GMEGVLKQYVGVWKGKKISANLPYKVAFVTEIEGR 672
            I CEVA+KS++ST                    +  K+G +VKVK PLKVYHVP++PE++L+  M GV+KQYVG WKGK IS N P+KV +  ++  R
Sbjct:   60 ICCEVALKSDSSTGFDSSSSSPPEEDEELKKNLE--KVGCKVKVKSPLKVYHVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDR 155
The following BLAST results are available for this feature:
BLAST of FC929331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTRV_MAIZE5.838e-1758.82Ferredoxin-thioredoxin reductase, variable chain O... [more]
FTRV_SPIOL6.454e-1645.92Ferredoxin-thioredoxin reductase, variable chain, ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3DG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929331 ID=FC929331; Name=FC929331; organism=Citrus clementina; type=EST; length=689bp
GGCACGAGGAGGAGAGGATGTATACGATCTAGAGTGTTATTCATTCGACA
CGTGTGCAATAGAGACGAAAGTCCGTTGCCATCGTCTTAGCTCGCCTTAG
CCACTGAGGCCTGAGATAGTGGTTCAATAGAAAAATCAATAATAATAATA
AAAAAAAGAGTAAAGGTTGGGTAATATCATTATTATTATATGATTATTTT
GTGAGAATTAGCAGACGAGTGAAAAGATAGATACACAGAAATCATGACTA
GTACAAGTTTTGCTTTGTCCTCGGCTACTTCTTCGTTGATAAATCGACGG
CCACTTGCGAATGCGTTTGTCTCAGTTTCTTCATTTTCAGCTGCCAATTG
TAATTACAATGTTAATGTTAACAAAAGAAGAATCTCCTGTGAAGTAGCTG
TAAAATCCAACAATTCAACGGCATCCGTAGGACTAGAGAGCAGTCCATCT
TCATCAGCATCAGCGTCGGATGATGGCTTTGATGAGTCTAAGATTGGTGC
GAGGGTTAAGGTGAAGGTGCCGTTGAAGGTTTACCATGTTCCTAGGGTTC
CGGAGCTTGATCTGTCTGGCATGGAAGGTGTGCTCAAGCAATACGTCGGC
GTTTGGAAAGGAAAGAAAATCTCAGCCAATCTGCCTTATAAGGTAGCGTT
TGTTACTGAAATTGAAGGCCGTACTGTCAAGTTCTTTGC
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