FC929374
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 3.169e-25 Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 3 Query: 12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAW 329 K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L IRD+ EK+ AFRG+C M+ NPSG + +F C A+ASW + ++L + C++LHG + + W Sbjct: 773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENW 877
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 3.169e-25 Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 3 Query: 12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAW 329 K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L IRD+ EK+ AFRG+C M+ NPSG + +F C A+ASW + ++L + C++LHG + + W Sbjct: 773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENW 877
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 3.169e-25 Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 3 Query: 12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAW 329 K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L IRD+ EK+ AFRG+C M+ NPSG + +F C A+ASW + ++L + C++LHG + + W Sbjct: 773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENW 877
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.739e-23 Identity = 46/108 (42.59%), Postives = 72/108 (66.67%), Query Frame = 3 Query: 12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAWDQ 335 K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L IRD+ EK+ AFRG+C M+ NP G + +F C A+ASW + ++L + ++LHG + W Q Sbjct: 762 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK-DDLRDMFYKILHGFKDQVGEENWQQ 868
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 3.626e-21 Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 3 Query: 12 KSLIENS----------AITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAWDQ 335 K+L+EN+ AIT+GRL +VCP+ V+P ++ F++PWC +L IRD+ EK+ AFRG+C M+ NP G + +F C A+ASW + ++L + ++LHG + W Q Sbjct: 762 KTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK-DDLRDMFYKILHGFKDQVGEDNWQQ 878
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO_DICDI (Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.789e-19 Identity = 44/110 (40.00%), Postives = 73/110 (66.36%), Query Frame = 3 Query: 6 LNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAWDQ 335 LN+ ++EN+A+T+GRL V P +SP ++ F+Q WC+A+ DD EK+ AFRG+ ++ NP+GAL LV++C A+ASW +++ +L+ ++LH + + G W Q Sbjct: 799 LNRGVLENTAVTIGRLGIVSPADISPFVDKFIQCWCMAIRRKTDDIEKDSAFRGMWLIINNNPNGALRHLVYICDAVASWDKMQ-PDLYEAYFKLLH-MYKTSMGGVWAQ 906
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: IMB2_SCHPO (Importin subunit beta-2 OS=Schizosaccharomyces pombe GN=kap104 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13 Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 3 Query: 9 NKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHG 299 N +++EN AIT+GRL PELV+PH+E F QPW + + ++ EK+ AFRG C ++ NP ALS L+ M + +E S EL + ++L G Sbjct: 788 NTTVLENVAITIGRLGVYNPELVAPHLELFYQPWFEIIKTVGENEEKDSAFRGFCNILACNPQ-ALSYLLPMFVLCVAEYENPSAELRDMFQKILQG 883 The following BLAST results are available for this feature:
BLAST of FC929374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC929374 ID=FC929374; Name=FC929374; organism=Citrus clementina; type=EST; length=355bpback to top |