FC929374

Overview
NameFC929374
Unique NameFC929374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15037 contig Ccv1_Contig15037:1..355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO1_MOUSE (Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.169e-25
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 3
Query:   12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAW 329
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG    + +  W
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENW 877          
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO1_HUMAN (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.169e-25
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 3
Query:   12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAW 329
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG    + +  W
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENW 877          
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO1_BOVIN (Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.169e-25
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 3
Query:   12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAW 329
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NPSG +   +F C A+ASW   + ++L +  C++LHG    + +  W
Sbjct:  773 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK-DDLRDMFCKILHGFKNQVGDENW 877          
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO2_MOUSE (Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.739e-23
Identity = 46/108 (42.59%), Postives = 72/108 (66.67%), Query Frame = 3
Query:   12 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAWDQ 335
            K+L+EN+AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NP G +   +F C A+ASW   + ++L +   ++LHG    +    W Q
Sbjct:  762 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK-DDLRDMFYKILHGFKDQVGEENWQQ 868          
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO2_HUMAN (Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.626e-21
Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 3
Query:   12 KSLIENS----------AITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAWDQ 335
            K+L+EN+          AIT+GRL +VCP+ V+P ++ F++PWC +L  IRD+ EK+ AFRG+C M+  NP G +   +F C A+ASW   + ++L +   ++LHG    +    W Q
Sbjct:  762 KTLLENTGRLTSPSAIPAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPK-DDLRDMFYKILHGFKDQVGEDNWQQ 878          
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: TNPO_DICDI (Transportin OS=Dictyostelium discoideum GN=tnpo PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.789e-19
Identity = 44/110 (40.00%), Postives = 73/110 (66.36%), Query Frame = 3
Query:    6 LNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGL*QMLRNGAWDQ 335
            LN+ ++EN+A+T+GRL  V P  +SP ++ F+Q WC+A+    DD EK+ AFRG+  ++  NP+GAL  LV++C A+ASW +++  +L+    ++LH + +    G W Q
Sbjct:  799 LNRGVLENTAVTIGRLGIVSPADISPFVDKFIQCWCMAIRRKTDDIEKDSAFRGMWLIINNNPNGALRHLVYICDAVASWDKMQ-PDLYEAYFKLLH-MYKTSMGGVWAQ 906          
BLAST of FC929374 vs. ExPASy Swiss-Prot
Match: IMB2_SCHPO (Importin subunit beta-2 OS=Schizosaccharomyces pombe GN=kap104 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 3
Query:    9 NKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHG 299
            N +++EN AIT+GRL    PELV+PH+E F QPW   +  + ++ EK+ AFRG C ++  NP  ALS L+ M     + +E  S EL +   ++L G
Sbjct:  788 NTTVLENVAITIGRLGVYNPELVAPHLELFYQPWFEIIKTVGENEEKDSAFRGFCNILACNPQ-ALSYLLPMFVLCVAEYENPSAELRDMFQKILQG 883          
The following BLAST results are available for this feature:
BLAST of FC929374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TNPO1_MOUSE3.169e-2544.34Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2[more]
TNPO1_HUMAN3.169e-2544.34Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2[more]
TNPO1_BOVIN3.169e-2544.34Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2[more]
TNPO2_MOUSE1.739e-2342.59Transportin-2 OS=Mus musculus GN=Tnpo2 PE=2 SV=1[more]
TNPO2_HUMAN3.626e-2138.98Transportin-2 OS=Homo sapiens GN=TNPO2 PE=1 SV=3[more]
TNPO_DICDI5.789e-1940.00Transportin OS=Dictyostelium discoideum GN=tnpo PE... [more]
IMB2_SCHPO3.635e-1341.24Importin subunit beta-2 OS=Schizosaccharomyces pom... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2BC12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929374 ID=FC929374; Name=FC929374; organism=Citrus clementina; type=EST; length=355bp
AGGAGTTGAACAAGTCACTCATAGAAAATAGTGCAATTACACTTGGAAGG
CTTGCGTGGGTTTGCCCAGAACTTGTGTCGCCCCACATGGAACATTTCAT
GCAACCTTGGTGCATTGCTTTGTCTATGATCCGTGATGATACTGAAAAGG
AGGATGCATTCCGAGGTCTTTGTGCAATGGTAAAAGCGAATCCATCAGGG
GCGCTAAGTTCACTTGTTTTCATGTGCAGAGCCATTGCTAGTTGGCATGA
AATAAGAAGTGAAGAGCTACATAATGAAGTTTGCCAGGTGTTGCATGGGT
TATAACAGATGCTTAGAAATGGAGCATGGGACCAGTGTATGTCTGCTTTG
GAGCC
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