FC929392

Overview
NameFC929392
Unique NameFC929392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length913
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8768 contig Ccv1_Contig8768:106..1019. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929392 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.248e-53
Identity = 110/148 (74.32%), Postives = 116/148 (78.38%), Query Frame = 1
Query:   28 MFTRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 471
            M  RLFGKPKQE NAL TLD                          AK+YS+AKNKRAAIQCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+TP+G
Sbjct:    1 MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMG 148          
BLAST of FC929392 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.743e-53
Identity = 109/145 (75.17%), Postives = 114/145 (78.62%), Query Frame = 1
Query:   37 RLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 471
            RLFGKPKQET+ L TLD                          AK++S+AKNKRAAIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS P G
Sbjct:    5 RLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG 149          
BLAST of FC929392 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.649e-13
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  166 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 468
            AK   ++ NK  A   LK+K+LYE Q+++L +    +  Q+  +E A    ET+ A++ GAS MK + K  ++D VD TMDEI EQ E  ++I EA+S P+
Sbjct:   48 AKKSLQSGNKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPL 148          
BLAST of FC929392 vs. ExPASy Swiss-Prot
Match: SNF7_CANAL (Vacuolar-sorting protein SNF7 OS=Candida albicans GN=SNF7 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.069e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  166 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 471
            A+ Y  +K    A   LKRK+ YE  + ++ N    +  Q+I +EGA    ET+ A++ GA  MK +    ++D V+ TMDEI EQ E   +I EA+S P+G
Sbjct:   49 ARKYVSSKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISRPVG 150          
BLAST of FC929392 vs. ExPASy Swiss-Prot
Match: CHM4B_DANRE (Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.823e-12
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 1
Query:  187 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 471
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E  ++I +A+S P+G
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVG 152          
BLAST of FC929392 vs. ExPASy Swiss-Prot
Match: SNF7_SCHPO (Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe GN=snf7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.110e-12
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = 1
Query:  190 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 471
            NKR A+  LKRK+++E ++ ++   +  I  Q+  ++ A    ET+ A+R GA  MK++Q+  + D VD+ MD+I +Q    ++I   +STP+G
Sbjct:   56 NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVG 149          
BLAST of FC929392 vs. ExPASy Swiss-Prot
Match: SNF7_CANGA (Vacuolar-sorting protein SNF7 OS=Candida glabrata GN=SNF7 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.110e-12
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  166 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 468
            A+ +    NK  A   LK+K++YE Q+ +L +    +  Q+  +E A    ET+ A++ GA  MK++    +ID VD+TMDEI EQ E  ++I +A+S P+
Sbjct:   49 ARKFLTRGNKTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAISRPL 149          
BLAST of FC929392 vs. ExPASy Swiss-Prot
Match: CHM4C_DANRE (Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.110e-12
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  187 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 471
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MK   +  +ID VD  M +I EQ E  ++I +A+S P+G
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVG 152          
BLAST of FC929392 vs. ExPASy Swiss-Prot
Match: SNF7_ASHGO (Vacuolar-sorting protein SNF7 OS=Ashbya gossypii GN=SNF7 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.928e-12
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  166 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 468
            A+ +    NK  A   LKRK+++E Q+ ++      +  Q+  +E A    ET+ A++ GAS MK + +  +++ VD+TMDEI EQ E  ++I EA+S P+
Sbjct:   50 ARHFLSKGNKNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAISRPL 150          
BLAST of FC929392 vs. ExPASy Swiss-Prot
Match: CHM4B_CHICK (Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.928e-12
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  187 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 471
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E   +I  A+S P+G
Sbjct:   62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156          
The following BLAST results are available for this feature:
BLAST of FC929392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VP322_ARATH1.248e-5374.32Vacuolar protein sorting-associated protein 32 hom... [more]
VP321_ARATH4.743e-5375.17Vacuolar protein sorting-associated protein 32 hom... [more]
SNF7_KLULA1.649e-1340.59Vacuolar-sorting protein SNF7 OS=Kluyveromyces lac... [more]
SNF7_CANAL1.069e-1238.24Vacuolar-sorting protein SNF7 OS=Candida albicans ... [more]
CHM4B_DANRE1.823e-1242.11Charged multivesicular body protein 4b OS=Danio re... [more]
SNF7_SCHPO3.110e-1235.11Vacuolar-sorting protein snf7 OS=Schizosaccharomyc... [more]
SNF7_CANGA3.110e-1236.63Vacuolar-sorting protein SNF7 OS=Candida glabrata ... [more]
CHM4C_DANRE3.110e-1241.05Charged multivesicular body protein 4c OS=Danio re... [more]
SNF7_ASHGO6.928e-1235.64Vacuolar-sorting protein SNF7 OS=Ashbya gossypii G... [more]
CHM4B_CHICK6.928e-1242.11Charged multivesicular body protein 4b OS=Gallus g... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BE12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929392 ID=FC929392; Name=FC929392; organism=Citrus clementina; type=EST; length=913bp
TTTTTGATTAATCGCGGAGAATCAAACATGTTTACTCGGCTTTTTGGAAA
ACCTAAACAGGAAACCAATGCCTTAACCACGCTCGATAAGCTAAATGAAA
CTCTTGAAATGCTAGAGAAAAAGGAGAAAGTACTCCTGAAAAAGGCTTCT
GTAGAGGTTGAAAAGGCCAAGGACTACTCCAAAGCAAAGAACAAAAGAGC
GGCCATACAATGTTTGAAGAGGAAGAGGCTATACGAACAGCAAATAGAGC
AGCTTGGGAATTTCCAATTGCGCATTCATGATCAGATGATAATGCTAGAA
GGTGCTAAAGCCACAACTGAGACTGTAGATGCATTGAGGACGGGAGCATC
GACAATGAAGGCTATGCAGAAAGCAACGAACATAGATGATGTGGATAAGA
CCATGGATGAGATCAATGAGCAGACCGAGAACATGAAGCAGATTCAAGAA
GCATTATCAACTCCTATTGGTGCTGCTGCTGATTTCGATGAGGATGAATT
GGAAGCAGAACTTGAAGAACTGGAAGGTGCTGAGTTGGAAGAGCAGCTTC
TACAGCCAGCTACAACAGCTCCTGCTGCTCCGGTTCAGGTCCCTGCTGGC
AGGCAACAAGCCCGTCCTGTTCCCCAAAAGCAGCGAACAGCTGAGGAAGA
TGAGCTTGCTGCTTTACAAGCTGAGATGGCTCTTTAAGCAGGTTTTACCG
CCATAATGAAGATATTATTTAAATAGCTGGCCGTATAATGTGGAGATTTA
TGCCTACTTGGATTACCTTCAAGATTTCTGTGTGCATTCAATGAACAGAC
TGTATATAAAGTTTGCGTAAACTAGTCCTGTTTGAAATATGTATCCTGTA
TTCTGTCTTATAGACCTTTTATTTGAGTCATCATCTTTGATGTGTTTTTT
CCTCTCCTGTGAA
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