FC929394

Overview
NameFC929394
Unique NameFC929394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15043 contig Ccv1_Contig15043:1..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929394 vs. ExPASy Swiss-Prot
Match: P2R3C_RAT (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Rattus norvegicus GN=Ppp2r3c PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 57/191 (29.84%), Postives = 88/191 (46.07%), Query Frame = 3
Query:  279 MLWVRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDG 818
            M W   LRR + S          E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++  I    G E M NYE+F  +     E+ GPKC++FF+   F K    D  GR++I+ F+ YVMR V L Q RI +S  D    G
Sbjct:    1 MDWKDVLRRRLASPNSDPKRKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QIPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRVSIMQFFNYVMRKVWLHQTRIGLSLYDVAGQG 186          
BLAST of FC929394 vs. ExPASy Swiss-Prot
Match: P2R3C_MOUSE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Mus musculus GN=Ppp2r3c PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.766e-11
Identity = 58/191 (30.37%), Postives = 88/191 (46.07%), Query Frame = 3
Query:  279 MLWVRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDG 818
            M W   LRR + S          E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++  I    G E M NYE+F  +     E+ GPKC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G
Sbjct:    1 MDWKDVLRRRLASPNTDPKRKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QIPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQG 186          
BLAST of FC929394 vs. ExPASy Swiss-Prot
Match: P2R3C_BOVIN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Bos taurus GN=PPP2R3C PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 53/190 (27.89%), Postives = 87/190 (45.79%), Query Frame = 3
Query:  279 MLWVRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDG 818
            M W   LRR + + +    +   E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++           +NYE+F  +     E+ GPKC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G
Sbjct:    1 MDWKEILRRRLATPSTSPHKKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQG 186          
The following BLAST results are available for this feature:
BLAST of FC929394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
P2R3C_RAT2.884e-1129.84Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_MOUSE3.766e-1130.37Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_BOVIN8.390e-1127.89Serine/threonine-protein phosphatase 2A regulatory... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2BF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929394 ID=FC929394; Name=FC929394; organism=Citrus clementina; type=EST; length=818bp
TTTTTTTTTTTTGGGGGAAAATAAGACGTGATAGATTATGAGTTTCTAAT
TTCTTGAATTGGTTTTTTCGCTAAGCCCGTCCTGAAATTCTAGGGTTTAA
TTCATTTCTACAAATTCTGTAAATTTTATTTAACAAATTACAGGGTGAAA
AAGTTGAACTTGTTCGAGTTTACTGAAGAGTCGAATTAGTTACTTGGATT
CGGCCGGCCATGTACAGTGGGTCCAGTGATGGCGAGAGTCACGAGGCCGC
GCAGCGAAAGATCCCGCCGGCTTCGTCAATGCTTTGGGTCCGAAACTTGC
GTCGCTTCATTGGATCCGGTACCGGCCTTGGATCCGAAGCCTTGATGGAG
CTTGAGACAAAGAGAATTTTGCTTGATATATTTAGAGAGAAGCAACAGAA
AAGTGCTGAAGCTGGCACAATTCCCAGCTTCTACAAGAAGAAACCTGAAG
AAGGGTCCATTAGTCACAGGGTCCAGAGACTTGCAAAATATCGGTTTTTA
AAGAAGCAATCAGATCTTTTACTAAATGCTGATGATCTGGATGCAATGTG
GGTTTGCTTGAGAGAAAACTGTGTTATTGATGATGCCACTGGTGCAGAAA
AGATGAATTATGAAGATTTTTGCCACATTGCATCAGTATGTACTGAGCAA
ATAGGCCCTAAGTGTAGACGTTTCTTCAGCCCGTCAAATTTTATGAAGTT
TGAGAAAGATGAGTCGGGGAGAATCGCCATTTTGCCGTTCTATCTATATG
TGATGCGTACGGTTTCACTTACACAAGCCAGAATTGATATGAGTGAGCTT
GATGAAGATTCTGATGGT
back to top