FC929435

Overview
NameFC929435
Unique NameFC929435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12114 contig Ccv1_Contig12114:965..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC21_MEDSA (Cell division control protein 2 homolog 1 (Fragment) OS=Medicago sativa GN=CDC2A PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.476e-31
Identity = 59/74 (79.73%), Postives = 69/74 (93.24%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV*FVP 229
            GTPNEDTWPGVTSLPDFKS FP+WPSK+L TVV NLEPAG+DLL+ MLC+DP++RITA+SA+EHEYFKD+ FVP
Sbjct:  218 GTPNEDTWPGVTSLPDFKSTFPRWPSKDLATVVPNLEPAGLDLLNSMLCLDPTKRITARSAVEHEYFKDIKFVP 291          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_CHERU (Cell division control protein 2 homolog OS=Chenopodium rubrum GN=CDC2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.250e-30
Identity = 59/74 (79.73%), Postives = 69/74 (93.24%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV*FVP 229
            GTPNE+TWPGVTSLPDFKS+FPKW SK+L  VV NL+PAGIDLL+KMLC+DPS+RITA++ALEHEYFKD+ FVP
Sbjct:  221 GTPNEETWPGVTSLPDFKSSFPKWISKDLSAVVPNLDPAGIDLLNKMLCLDPSKRITARNALEHEYFKDIGFVP 294          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 8.957e-29
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV*FVP 229
            GTPNE+TWPGVTSLPDFKSAFPKWP+KEL  VV NL+ +G+DLL KML +DPS+RITA++AL+HEYFKD+ FVP
Sbjct:  221 GTPNEETWPGVTSLPDFKSAFPKWPAKELAAVVPNLDASGLDLLDKMLRLDPSKRITARNALQHEYFKDIGFVP 294          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC22_MEDSA (Cell division control protein 2 homolog 2 OS=Medicago sativa GN=CDC2B PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.957e-29
Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV*FVP 229
            GTPNE+TWPGVTSLPDFKSAFPKWP+K+L T V NLEPAG+DLLS    +DP+RRITA+ ALEHEYFKD+ FVP
Sbjct:  221 GTPNEETWPGVTSLPDFKSAFPKWPAKDLATQVPNLEPAGLDLLSSTCRLDPTRRITARGALEHEYFKDIKFVP 294          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_VIGAC (Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.170e-28
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV*FVP 229
            GTPNE+TWPGVT+LPDFKS FPKWP K+L TVV NL+ AG++LLS MLC+DPS+RITA+ A+EHEYFKD+ FVP
Sbjct:  221 GTPNEETWPGVTALPDFKSTFPKWPPKDLATVVPNLDAAGLNLLSSMLCLDPSKRITARIAVEHEYFKDIKFVP 294          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.763e-27
Identity = 53/74 (71.62%), Postives = 65/74 (87.84%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV*FVP 229
            GTPNE+TWPGVT+LPDFKS FPKWP K+L T+V NL+ AG++LLS ML +DPS+RITA+ A+EHEYFKD+ FVP
Sbjct:  221 GTPNEETWPGVTALPDFKSTFPKWPPKDLATMVPNLDAAGLNLLSSMLSLDPSKRITARIAVEHEYFKDIKFVP 294          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2B_ANTMA (Cell division control protein 2 homolog B (Fragment) OS=Antirrhinum majus GN=CDC2B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.384e-27
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPNED WPGVTSLPDFKS+FPKWP KEL T+V NL   G+DLL KML +DPS+RITAK ALEHEYFKD+
Sbjct:  208 GTPNEDIWPGVTSLPDFKSSFPKWPPKELATIVPNLGATGLDLLCKMLQLDPSKRITAKKALEHEYFKDI 277          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_MAIZE (Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.339e-24
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPNE +WPGV+ LPDFK+AFP+W +++L TVV NL+PAG+DLLSKML  +PS+RITA+ ALEHEYFKD+
Sbjct:  221 GTPNEQSWPGVSCLPDFKTAFPRWQAQDLATVVPNLDPAGLDLLSKMLRYEPSKRITARQALEHEYFKDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.283e-24
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPNE +WPGV+SLPD+KSAFPKW +++L T+V  L+PAG+DLLSKML  +P++RITA+ ALEHEYFKD+
Sbjct:  221 GTPNEQSWPGVSSLPDYKSAFPKWQAQDLATIVPTLDPAGLDLLSKMLRYEPNKRITARQALEHEYFKDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDKA2_ORYSJ (Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.086e-24
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPNE+TWPGV SLPD+ S FPKWPS +L TVV  L+ +G+DLLSKML +DPS+RI A++ALEHEYFKD+
Sbjct:  220 GTPNEETWPGVASLPDYISTFPKWPSVDLATVVPTLDSSGLDLLSKMLRLDPSKRINARAALEHEYFKDL 289          
The following BLAST results are available for this feature:
BLAST of FC929435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CDC21_MEDSA1.476e-3179.73Cell division control protein 2 homolog 1 (Fragmen... [more]
CDC2_CHERU1.250e-3079.73Cell division control protein 2 homolog OS=Chenopo... [more]
CDC2A_ANTMA8.957e-2975.68Cell division control protein 2 homolog A OS=Antir... [more]
CDC22_MEDSA8.957e-2977.03Cell division control protein 2 homolog 2 OS=Medic... [more]
CDC2_VIGAC1.170e-2874.32Cell division control protein 2 homolog OS=Vigna a... [more]
CDC2_VIGUN3.763e-2771.62Cell division control protein 2 homolog OS=Vigna u... [more]
CDC2B_ANTMA8.384e-2777.14Cell division control protein 2 homolog B (Fragmen... [more]
CDC2_MAIZE1.339e-2470.00Cell division control protein 2 homolog OS=Zea may... [more]
CDKA1_ORYSJ2.283e-2468.57Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
CDKA2_ORYSJ5.086e-2470.00Cyclin-dependent kinase A-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CB01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929435 ID=FC929435; Name=FC929435; organism=Citrus clementina; type=EST; length=535bp
GGCACGAGGAACACCTAATGAGGACACATGGCCTGGAGTGACTTCATTGC
CTGACTTTAAATCTGCCTTTCCTAAATGGCCTTCTAAGGAGTTGGGGACT
GTTGTTCGAAATCTTGAGCCAGCTGGCATTGATCTCCTTTCTAAAATGCT
CTGCATGGATCCAAGCAGAAGAATTACTGCCAAAAGTGCTCTAGAACATG
AATACTTCAAGGACGTCTAATTTGTACCCTAATATCTGTTGTATATGCTA
TTAAAGTGTTGACATTATTGTGAAGCCTTCGGTTTTGATTGTTTGCGAAA
TTTGCCGACTGTCTTTACTTGCAGTTTTACTGAAAAGTCTTACTACATGG
AATGGCTTTTTACAGTCATCTCTGGATTTGCCTAGTTTGTAATCGTGTAT
TCGCGGCTTTCTTGATCTTGTGGATAAATGTTTGTGCCAGTTTTTCTTTT
AATATTTGATATGTAATACACCAAATTGAATTTGTTGTTCGAATGATGTT
CCTGGTGCGCATGAACGGCTGCCTGAAGGTGCGGA
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