FC929436

Overview
NameFC929436
Unique NameFC929436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15009 contig Ccv1_Contig15009:1..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929436 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.335e-51
Identity = 100/210 (47.62%), Postives = 137/210 (65.24%), Query Frame = -1
Query:  175 LGMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLVGLLPNPELALDSLSI 804
            LGM SAV+T+CGQAYGA +Y  +GI  QR+ VL     + +T LY +S PIL  +G+S  IA    +F  G+IPQI+A+AL  P+Q+FLQAQ+IV P AY+S    ++H LL+W+                  SWW++V    +YI+ S  CK TW GF+ +AF G+  +FKL+ ASAVMLCLE WY Q LV++ GLL NP ++LD++SI
Sbjct:  107 LGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISI 316          
BLAST of FC929436 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.308e-20
Identity = 58/208 (27.88%), Postives = 106/208 (50.96%), Query Frame = -1
Query:  178 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLVGLLPNPELALDSLS 801
            G+ SA +TL  Q YG+   + +G+ LQR +++L L  +    L++ ++ IL+   + P ++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ VY+              + + + +  F+YI++S   + TW G++++      SFF+L+  S +MLC+E W ++I   L G+L   EL   S++
Sbjct:   90 GLSSACDTLISQTYGSRNLKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQTYVTIFIPALPATFLYTLQVKYLLNQGIVLPQVVTGVAANLVNALANYLFVYQLHLGVMGSALANTVAQFTLALLLFLYILRSKVYQATWGGWSLECLQDWASFFRLAIPSMLMLCMEWWAYEIGSFLSGILGMVELGAQSVT 297          
BLAST of FC929436 vs. ExPASy Swiss-Prot
Match: YAO6_SCHPO (Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe GN=SPAC11D3.06 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.417e-19
Identity = 62/210 (29.52%), Postives = 107/210 (50.95%), Query Frame = -1
Query:  181 LGMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWI--VVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLVGLLPNPELALDSL 804
            LG  +A +TL    +GA K + LGI LQ   ++L++  + + +++ +S+PILIFL ++P++A ++  F+  LIP    Y     ++KFLQ Q I    +YI   T  +++ L+++ V+               S+W+  +++ Q+   VK       W G+  +       F KLS    VM+  E W F+I+ L+ G L    LA  S+
Sbjct:   63 LGGTTAFDTLGSNLWGAGKKQELGILLQTGFIVLSILYLPICLVWWYSKPILIFLHQTPELAEASQKFLRYLIPGGLGYVCFELLKKFLQTQEITRAGSYILLVTSPLNVALNFLLVHYYGLGLKGAPLATGLSYWLSFILLTQYAKYVKG---AEAWNGWNKRCLENFGPFVKLSLLGIVMVGTEWWAFEIVALVAGKLGAVPLAAQSV 269          
BLAST of FC929436 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.385e-19
Identity = 56/207 (27.05%), Postives = 101/207 (48.79%), Query Frame = -1
Query:  181 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLVGLLPNPELALDSL 801
            G+  A +TL  Q +G +  +++GI LQR  ++L L       L + +  IL+   + P+++    ++V   +P + A  L   + K+LQ Q I+ P         + + L +++ +Y               S +I +I  F+YIV       TW G++   F    +F +L+ AS +MLC+E W F+I + L G+L   +LA  ++
Sbjct:  105 GLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWSQACFEEWGAFIRLAVASMLMLCIEWWAFEISMFLAGVLGMVDLAAQAI 311          
BLAST of FC929436 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.185e-19
Identity = 57/207 (27.54%), Postives = 103/207 (49.76%), Query Frame = -1
Query:  181 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLVGLLPNPELALDSL 801
            G+ SA +TL  Q YG+   + +G+ LQRSA++L L       L++ ++ IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ +++              S + + +  F+YI+     + TW G++++      SF +L+  S +MLC+E W +++   L G+L   EL   S+
Sbjct:   91 GLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSI 297          
BLAST of FC929436 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.046e-18
Identity = 57/207 (27.54%), Postives = 101/207 (48.79%), Query Frame = -1
Query:  181 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLVGLLPNPELALDSL 801
            G+ SA +TL  Q YG+   + +G+ LQRSA++L L       L++ ++ IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ +++              S + + +  F YI+     + TW G++++      SF  L+  S +MLC+E W +++   L G+L   EL   S+
Sbjct:   91 GLSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGAIGSALANLISQYTLALLLFFYILGKKLHQATWGGWSLECLQDWASFLHLAVPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSI 297          
BLAST of FC929436 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.046e-18
Identity = 58/208 (27.88%), Postives = 108/208 (51.92%), Query Frame = -1
Query:  181 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQ-KFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLVGLLPNPELALDSL 801
            G+ SA +TL  Q +G+N  + +G+ LQR  ++L L       L + + PIL+ + +SP++AS + ++V   +P + A A  + +Q ++LQ Q I+ P      A  +++ L+++V ++               S + + +  +VYI   +  K TW G++        +F +L+  S +MLC+E W ++I   L GL+   EL   S+
Sbjct:  109 GLASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPA-AFMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYIRWKNLHKATWDGWSRDCLQEWGAFIRLALPSMLMLCVEWWTYEIGGFLAGLISETELGAQSV 315          
BLAST of FC929436 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.490e-18
Identity = 59/208 (28.37%), Postives = 104/208 (50.00%), Query Frame = -1
Query:  181 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQ-KFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLVGLLPNPELALDSL 801
            G+ SA +TL  Q++G    + +G+ LQR  ++L L       +++ +  +L+ L + PD+A  A V+V   IP + A A  F +Q ++LQ+Q I+ P   +  A  VV++ ++   +Y               S + +    F+Y+       HTW G+T + F    S+ +L+  S  M+C+E W F+I   L GL+   EL   ++
Sbjct:  100 GLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPA-AFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTELGAQAV 306          
BLAST of FC929436 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.954e-18
Identity = 58/208 (27.88%), Postives = 99/208 (47.60%), Query Frame = -1
Query:  178 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLVGLLPNPELALDSLS 801
            G+ SA +TL  Q YG+   + +G+ LQR  ++L L       L++ +  IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L ++V +Y               S + + I  F+YI+     + TW G++ +      SF +L+  S +MLC+E W +++   L G+L   EL   S++
Sbjct:   91 GLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSWECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSIT 298          
BLAST of FC929436 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.955e-17
Identity = 56/208 (26.92%), Postives = 99/208 (47.60%), Query Frame = -1
Query:  178 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLVGLLPNPELALDSLS 801
            G+ SA +TL  Q YG+   + +G+ LQR  ++L L       L++ +  IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ +++              S + + I  F+YI+       TW G++ +      SF +L+  S +MLC+E W +++   L G+L   EL   S++
Sbjct:   90 GLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSWECLQDWASFLQLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSIT 297          
The following BLAST results are available for this feature:
BLAST of FC929436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TT12_ARATH5.335e-5147.62Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_RABIT8.308e-2027.88Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
YAO6_SCHPO1.417e-1929.52Uncharacterized transporter C11D3.06 OS=Schizosacc... [more]
S47A1_XENTR5.385e-1927.05Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A1_HUMAN9.185e-1927.54Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_PONAB2.046e-1827.54Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A1_DANRE2.046e-1827.88Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A2_MOUSE3.490e-1828.37Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_MOUSE5.954e-1827.88Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_RAT2.955e-1726.92Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929436 ID=FC929436; Name=FC929436; organism=Citrus clementina; type=EST; length=867bp
GGAAAATTACCCATTTGAACAATCAAATGTACCAAATGATGGCTTTGGCA
ACCAAATGAAATCATGAGTGATTTGTGAAACTAATTTACTGAAAGTTAAG
GGGGGAGAGCTTAGATGCAATTATCAAAAAAGGGCGTGACCAAAAAGGGA
AGGAAAATAGTTTTCTGCTTACCAAATGGAAAGAGAGTCCAAAGCCAACT
CCGGATTTGGTAACAAACCAACCAATAGAACAAGAATCTGAAAGTACCAC
GTCTCCAAGCACAGCATCACAGCGGAGGCAGCCGATAGTTTGAAGAAGGA
AGGGAGACCAGAGAAGGCCTGAACAGTAAACCCACGCCACGTGTGCTTAC
ACCTATCACTTTTAACAATATAAACAAACTGAGCAATCACAACAATCCAC
CAGGATAAGCTCAAGATCAGTGAGGCGCCAATCAAGCCAAGCCCGATTTC
GTAGACTGCAACCCAACTTAGCAGCAGATGCACCACTAACGTGGCCGTTG
AAATGTATGCACTTGGAGCCACTATGCTTTGTGCTTGCAAAAATTTTTGG
ATTGGGAAGTTCAAGGCGTATGCAAAGATTTGGGGTATCAGGCCGTAGAC
AAAAACTGCCGCTGATGAGGCAATATCTGGCGACTCCCCTAGAAAAATCA
AAATTGGTCTCGAAAAGACGTATAGAACTGTCATTAAAATCCCCGTGAGC
GTCAGCAGAACCGCTGATCTTTGCAAATATATCCCTAGCATTTCATATTT
GTTTGCACCGTATGCTTGCCCACATAATGTCTCCACGGCACTTCCCATTC
CCAACTGTTAACAAAAGAATTTAATTATAAGAATATTAAAGTACCCTGTG
TGCGTGTGCGTATGTAC
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