FC929437

Overview
NameFC929437
Unique NameFC929437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9287 contig Ccv1_Contig9287:11..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929437 vs. ExPASy Swiss-Prot
Match: KCO1_ARATH (Calcium-activated outward-rectifying potassium channel 1 OS=Arabidopsis thaliana GN=KCO1 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 7.710e-44
Identity = 100/192 (52.08%), Postives = 130/192 (67.71%), Query Frame = 3
Query:  225 MASNGANQPLL-SGFVDSTSQTNNKDA----PKRRRLRRCRSAPQTDVAALD---INEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIEPTK 776
            M+S+ A  PLL +  +D+ +Q  N ++     ++RRLRR RSAP+ D    D   I+E         +F    PN +RV+++LA YL  G+L FY V  QI G KT+ ++D++YFCIVTMTTVGYGDLVPNS  S+LL+CAFVF+GM LVG  LS+AADYLV+KQE LLV+A H  Q  GPTDILKE+   K
Sbjct:    1 MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKELHTNK 192          
BLAST of FC929437 vs. ExPASy Swiss-Prot
Match: KCO6_ARATH (Probable calcium-activated outward-rectifying potassium channel 6 OS=Arabidopsis thaliana GN=KCO6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.802e-16
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  318 LRRCRSAPQTDVAA---LDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHR 725
            L R ++AP   V       I +KD T  S S+        ++    L  YL  G L ++         +T+ ++D +YFCIVTM T+GYGD+ PNSVV+KL S  FV  G G + + LS    Y++D QE  ++ +  R
Sbjct:  118 LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVV-------RQAFALLVVYLSLGVLIYWLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKR 249          
BLAST of FC929437 vs. ExPASy Swiss-Prot
Match: KCO5_ARATH (Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic OS=Arabidopsis thaliana GN=KCO5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.822e-15
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  270 DSTSQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVN-SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQ 731
            DS S   N+   + R L R R+AP   V   D+  K       S   K     ++ +  L  YL  G +S Y+ N     G++T+ ++D++YFCIVTM T+GYGD+ P +  +K+ +  FV  G G + + LS   +Y++D QE +++  +   Q
Sbjct:   68 DSDSDETNRFLSQTRPLHRSRTAPAM-VIIKDLRTKPPETKKPSPVSKSI--IRQAIFLLIVYLTLG-VSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQ 218          
BLAST of FC929437 vs. ExPASy Swiss-Prot
Match: KCO2_ARATH (Probable calcium-activated outward-rectifying potassium channel 2 OS=Arabidopsis thaliana GN=KCO2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.418e-13
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  432 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQE 698
            + +  L  YL  G L ++         +T+ ++D++YFCIVTM T+GYGD+ P+SVV+KL S  FV  G G + + LS    Y++D QE
Sbjct:  148 QAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQE 236          
The following BLAST results are available for this feature:
BLAST of FC929437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
KCO1_ARATH7.710e-4452.08Calcium-activated outward-rectifying potassium cha... [more]
KCO6_ARATH6.802e-1635.25Probable calcium-activated outward-rectifying pota... [more]
KCO5_ARATH9.822e-1532.26Probable calcium-activated outward-rectifying pota... [more]
KCO2_ARATH1.418e-1340.45Probable calcium-activated outward-rectifying pota... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2CB03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929437 ID=FC929437; Name=FC929437; organism=Citrus clementina; type=EST; length=830bp
GGCACGAGGCAACACACTCACTTCATAAAGTTTCTTCCTTGATCTGGGGG
TGGTCTTGTGTCAGCTTGATAATGAACTCTAGAAGAATATAAACTGATTT
TCCACTGGCAATTATGTTTATAATGTAAAGTTAACTCCCCAGAAGTATTG
TATATCATCTGATATCCTTGACAGTGACTGTGTTCATAATTCTAAAGGTC
TGAGTCCGCTTTTGCTATCCTCTAATGGCCTCCAATGGTGCAAATCAGCC
GCTGCTCTCAGGATTTGTTGATTCAACGTCTCAAACAAATAATAAAGATG
CTCCCAAGAGAAGAAGGCTTCGTCGGTGTAGAAGTGCTCCCCAGACTGAT
GTTGCTGCTCTAGACATAAATGAAAAAGACTCAACTCACCTTTCTGAGTC
CCTTTTTGGCAAACCCCGCCCAAATTTTAAGAGGGTACTTGTCTACCTGG
CTGCCTACCTTGGTGGGGGGTCATTATCCTTCTATGCTGTCAACAGTCAA
ATCGAAGGACTAAAAACCAATGAAATTCTAGATTCTATTTATTTCTGCAT
CGTGACAATGACCACTGTAGGGTATGGAGACCTTGTGCCTAATAGTGTCG
TTTCGAAACTACTTTCCTGTGCTTTTGTTTTCACAGGGATGGGTCTAGTT
GGTCTGTTTCTGAGCAAAGCAGCCGACTATCTGGTCGACAAGCAGGAAAT
ATTGCTGGTTAAAGCCCTACACAGGTATCAAAAAGTTGGCCCGACTGATA
TTCTAAAGGAGATTGAACCAACAAAGTGAGATACAAATGCATCATCATGT
TGGTCCTTGAGTTGGTTCTCATTCTCGTTG
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