FC929500

Overview
NameFC929500
Unique NameFC929500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length811
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14291 contig Ccv1_Contig14291:279..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929500 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.307e-76
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 3
Query:    3 SSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERR 449
            ++S E RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPC YPTYQP + + SKY SK Y R+RDGPPAE+R
Sbjct:   70 NNSGEERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSRSSKYKSKAYVRQRDGPPAEQR 218          
BLAST of FC929500 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.458e-32
Identity = 70/166 (42.17%), Postives = 103/166 (62.05%), Query Frame = 3
Query:    6 SSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTY---------------QPNKRKESKYVSKRYERRRD----GPPAER 446
            S+  P+ETI+L GCD+ HWL+V+E P    PTR+++I++Y+ TLA ++GS +EA+  +Y+ ST  Y  F   VSE+ S K K L  V WVLPDSY+DV+NKDYGG+ +++G+ +P   P Y               + N R  +   S+ +ERRR+    GPP +R
Sbjct:   82 SNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYD-PKYHEEWIRNNARANERNRRNDRPRNNDRSRNFERRRENMAGGPPPQR 245          
The following BLAST results are available for this feature:
BLAST of FC929500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DAG_ANTMA7.307e-7688.59DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
UMP1_ARATH8.458e-3242.17Uncharacterized protein At3g15000, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2CH03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929500 ID=FC929500|Name=FC929500|organism=Citrus clementina|type=EST|length=811bp
GAAGCAGCAGCAATGAGCCGAGGGAGACGATTATGTTACCGGGATGTGAC
TACAACCACTGGCTTATTGTCATGGAGTTCCCCAAGGACCCTGCTCCCAC
GAGAGAGCAGATGATTGAAACTTATCTCAATACTCTTGCCACTGTTCTTG
GAAGCATGGAAGAAGCAAAGAAGAATATGTATGCTTTTAGCACCACTACT
TACACTGGATTCCAATGCACAGTATCCGAAGAAACCTCAGAGAAATTCAA
AGGCCTGCCTGGTGTTCTTTGGGTGTTGCCCGATTCATACATAGATGTCA
AAAATAAAGATTATGGAGGTGATAAATATGTCAATGGAGAGATCATTCCC
TGCACATATCCCACTTATCAGCCAAACAAACGAAAAGAATCAAAATATGT
GAGCAAAAGATATGAGAGACGAAGAGATGGCCCTCCTGCTGAAAGAAGAA
CGAGACAAGCAGCTGGTCAGTCAGAATCAGCGTCGTCATAAGTTTGCGAC
TCCAAAAGCCAATCATACTACTGCCACCATGCGTATCAGCAGTCTAATCA
AGACACCTGTTTTATGAGTTCTCAAGCTGTTCTTGGTAGTTTTTGTAATG
GATATCATTTAATGTAGTTAGGATAGAAATTCTCTGGTAATCGCCATCAT
TTAGTTTTGTGCCTCTGGGCTTGTTATTTGAAATGTTGTCCACTGACATT
TCATGGTTGCCGAAGGTCTGCTGTCTATTGTCTAAAAGTACTGTTGTGTC
AGATTTCTCATTTAGCTTTAATATATAAAGTTAATTTTGCCGTAAAAAAA
AAAAAAAAAAA
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