FC929560

Overview
NameFC929560
Unique NameFC929560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig135 contig Ccv1_Contig135:528..1146. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929560 vs. ExPASy Swiss-Prot
Match: TLC1_SOLTU (Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 8.802e-40
Identity = 87/121 (71.90%), Postives = 96/121 (79.34%), Query Frame = 3
Query:    9 VKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTALRQXXXXXXXXXRAAVKIPVVSENEGGNGTLPGGSALNAAG----ETPSEASSPRNI 359
            VKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLA+STPYLGG+LLVIVLAWLGAA+SLD QFT LRQ         RA++KIPVVS+NE GNG L   S+LN AG       SE SSPR++
Sbjct:  511 VKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLASSTPYLGGVLLVIVLAWLGAAKSLDGQFTQLRQEEDLEKEMERASLKIPVVSQNENGNGPLSSESSLNPAGGDSTNASSEPSSPRSL 631          
BLAST of FC929560 vs. ExPASy Swiss-Prot
Match: TLC1_ARATH (ADP,ATP carrier protein 1, chloroplastic OS=Arabidopsis thaliana GN=AATP1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.960e-32
Identity = 79/121 (65.29%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    9 VKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTALRQXXXXXXXXXRA-AVKIPVVSENEGGNGTLPGGSALNAAGETPS---EASSPRNI 359
            VKGKAAIDVVCNPLGKSGGALIQQFMIL+FGSLANSTPYLG ILLVIV AWL AA+SL+ QF +LR          RA +VKIPVVS++E GNG+L         GE+PS   E S+P N+
Sbjct:  513 VKGKAAIDVVCNPLGKSGGALIQQFMILSFGSLANSTPYLGMILLVIVTAWLAAAKSLEGQFNSLRSEEELEKEMERASSVKIPVVSQDESGNGSL---------GESPSSSPEKSAPTNL 624          
BLAST of FC929560 vs. ExPASy Swiss-Prot
Match: TLC2_ARATH (ADP,ATP carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=AATP2 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.010e-27
Identity = 66/94 (70.21%), Postives = 72/94 (76.60%), Query Frame = 3
Query:    9 VKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTALRQXXXXXXXXXRA-AVKIPVVSENEGGNG 287
            VKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLG ILL IV AWL AA+SL+ QF  L           RA +VKIPVVS+ +  +G
Sbjct:  510 VKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGVILLGIVTAWLAAAKSLEGQFNTLMSEEELEREMERASSVKIPVVSQEDAPSG 603          
BLAST of FC929560 vs. ExPASy Swiss-Prot
Match: TLC1_CHLPN (ADP,ATP carrier protein 1 OS=Chlamydia pneumoniae GN=tlcA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 3
Query:    9 VKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTA 200
            VKGKAAIDVV    GKSGGALIQQ +++  GS+   TPYL  ILL I+  WL +A  L+  F A
Sbjct:  433 VKGKAAIDVVAARFGKSGGALIQQGLLVICGSIGAMTPYLAVILLFIIAIWLVSATKLNKLFLA 496          
The following BLAST results are available for this feature:
BLAST of FC929560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TLC1_SOLTU8.802e-4071.90Plastidic ATP/ADP-transporter OS=Solanum tuberosum... [more]
TLC1_ARATH3.960e-3265.29ADP,ATP carrier protein 1, chloroplastic OS=Arabid... [more]
TLC2_ARATH5.010e-2770.21ADP,ATP carrier protein 2, chloroplastic OS=Arabid... [more]
TLC1_CHLPN8.585e-1156.25ADP,ATP carrier protein 1 OS=Chlamydia pneumoniae ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH1AD11RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929560 ID=FC929560; Name=FC929560; organism=Citrus clementina; type=EST; length=619bp
TTTGTTAGGTTAAAGGGAAGGCAGCCATCGATGTTGTGTGCAACCCGTTG
GGGAAATCTGGAGGAGCTCTTATTCAGCAGTTTATGATATTAACCTTTGG
GTCCCTTGCGAATTCAACTCCTTATCTTGGAGGGATACTTTTGGTGATTG
TTCTTGCATGGTTAGGAGCAGCCAGGTCTTTAGATACCCAATTTACAGCT
TTGCGTCAGGAAGAAGAGCTTGAGAAGGAGATGGAAAGAGCTGCTGTTAA
GATCCCAGTTGTCTCTGAAAATGAAGGCGGGAATGGTACTCTTCCAGGTG
GATCAGCTTTGAATGCAGCAGGTGAGACACCCAGTGAAGCATCTAGTCCA
CGCAATATCTGAAATAGTTTCTTCCAATTCCTTGCCGCATGAAGAATGAG
AAGCATCAATACTTGAGGTATTGCTTGTAGGATCTTCTCAAATTACACAA
ATAATAGTAGCTAAACAAAGTATGAGCCCGTCTGTCTTAATTCCGCCTTT
TTCCCGTAGATAATGAGTTTAGTATCTGTTTACTCATACATTCATGTTCT
TTGTAGAATTCGAATTTGGTTTTTTATTGATAGCAACAACATTAAATTTA
ATAAAAAAAAAAAAAAAAA
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