FC929588

Overview
NameFC929588
Unique NameFC929588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length884
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11159 contig Ccv1_Contig11159:564..1447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929588 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.146e-14
Identity = 57/150 (38.00%), Postives = 77/150 (51.33%), Query Frame = 1 
Query:  457 RPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT---------SVPTVTYEGRFEILCLSGSFLLAEDGSPRDRTGGVSASLFSPDGHVFGG 876
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G DIV  + +++++R R V +L G GTVS+VTLRQP T             VT  GRFEIL L+G+ +L     P    GG+S  L    G V GG
Sbjct:   72 RPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGT-VLPPPAPP--GAGGLSIFLAGGQGQVVGG 215
The following BLAST results are available for this feature:
BLAST of FC929588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH3.146e-1438.00Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2DC09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929588 ID=FC929588; Name=FC929588; organism=Citrus clementina; type=EST; length=884bp
GTGTTAGGGAGATCAGGATCTTGTGTGTATTTAGTTTAAGATTTTAGCTT
AAGTGGCTTAATAGACTCATTTTCTAGCTACCCAAAAAGAAAAAAAATTC
ATTTTCTACTTAGTAAATGCATGGACGGAAGAGAAGCTATGGTTGCATCA
GGGGGTGTCTCTGGTCCCTATTACATTCAACAACATAGAGGAGCATTCAG
TGGTTCTCATTCAGCAACACAATCTGGTTTAATGCAAACCCCACCTGGGT
TTAGATCCTCGTCAAATCTTAACATTCCAACTCAACCAAATGTGGGATCG
ACATTTGCAGTTGAGCCCAAACATGTCAATTTTGGCCATAACATGAGTGT
GCCATCCGGGGTGCCACTAAGTGATCCAGTGAAGAAGAAGAGAGGTAGAC
CCCGCAAATATGCCCCTGATGGGCAGGTTTCCTTGGGGCTTTCGCCATTG
CCAGCCAGGCCAAAGCGTTCTCCGGCATCTGATTCGCAGGCCTTGAAACG
GAGTAGAGGGCGGCCTCCTGGGACAGGCAGGAAGCAGCAGTTGGCTACTC
TTGGTGAATGGATGAATAGTTCAGCTGGAATTGCTTTTGCACCGCATGTG
ATCTCCATTGGAGTTGGAGAGGACATTGTGGCTAAAATGTTGTCATTTTC
ACAACAGAGGCCAAGGGTTGTGTGCATCTTGTCAGGCCGTGGTACAGTTT
CTTCAGTAACACTCCGTCAGCCTGCAACTTCAGTGCCCACCGTCACCTAT
GAAGGCCGTTTCGAGATATTATGCCTGTCTGGTTCATTCTTACTTGCTGA
AGATGGCAGTCCTCGTGATCGAACTGGTGGTGTAAGTGCTTCCCTTTTCA
GTCCTGATGGTCACGTATTCGGGGGGTGGAGTTG
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