FC929604

Overview
NameFC929604
Unique NameFC929604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14818 contig Ccv1_Contig14818:22..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.591e-52
Identity = 135/294 (45.92%), Postives = 183/294 (62.24%), Query Frame = 3
Query:   15 MALNLLSSLPAVCNFTRLSLPLSSKV----------NGFVPPITRVQYPMAASTTSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN------KSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 848
            MAL LL+SLP + NF+R+  P+SSK           NG+   + R    M A+  S  P    I+RRSA+Y P+IW+ DYI+SL  +Y GE+  RQ+  LKEQV  ML   +KVV+  PL QL+LI+ L RLG+SYHFE+EIKR LD ++N +        ++LYATALKFR+LRQ+GY+   +E F+ F DE+GSFK +   ++ KGM               +I  +A  F+T +L E+V +     N ++ L TLV H+LE PLHWRM RLEARWFI++Y    D+NPILL
Sbjct:    1 MALKLLTSLP-MYNFSRV--PVSSKDPILLVTSRTRNGY---LARPVQCMVANKVSTSP---DILRRSANYQPSIWNHDYIESLRIEYVGETCTRQINVLKEQVRMML---HKVVN--PLEQLELIEILQRLGLSYHFEEEIKRILDGVYNNDHGGDTWKAENLYATALKFRLLRQHGYSVS-QEVFNSFKDERGSFK-ACLCEDTKGMLSLYEASFFLIEG-ENILEEARDFSTKHLEEYVKQ-----NKEKNLATLVNHSLEFPLHWRMPRLEARWFINIYRHNQDVNPILL 272          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.013e-47
Identity = 118/270 (43.70%), Postives = 155/270 (57.41%), Query Frame = 3
Query:   57 FTRLSLPLSSKVNGFVPPITRVQYPMAASTTSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAML-QQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIH-----NKNTNKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 848
            FT  +  +++K +   P    +Q  +A S +S      TI+RRSA+Y P IWSFD+IQSL  KYKGE Y  +  KLKE+V  ML   +N +V      QL+LID L RLG+SYHFE+EI   L         NKN    LYATAL+FR+LR+YGY  P +E F+ F DE G FK S  +D+ KG+               +I  +A  FTT YL  +V   D +   ++ +  LV+HALE+PLHWR  R EA+WFI+ YE   D N  LL
Sbjct:   33 FTPKTSNITTKKSRSRPNCNPIQCSLAKSPSSDT---STIVRRSANYDPPIWSFDFIQSLPCKYKGEPYTSRSNKLKEEVKKMLVGMENSLV------QLELIDTLQRLGISYHFENEIISILKEYFTNISTNKNPKYDLYATALEFRLLREYGYAIP-QEIFNDFKDETGKFKASIKNDDIKGV-LALYEASFYVKNGENILEEARVFTTEYLKRYVMMIDQNIILNDNMAILVRHALEMPLHWRTIRAEAKWFIEEYEKTQDKNGTLL 291          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.310e-40
Identity = 99/230 (43.04%), Postives = 135/230 (58.70%), Query Frame = 3
Query:  180 RRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEI-----KRTLDRIHNKNTNKSLYATALKFRILRQYGYNTPVKESFSRFMDEK-GSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFI-DVYESGPDMNPILL 848
            RRSA+YGP IWSFD++QSL  +YKGESY  +L KL++ V  ML     +   + L QL+LID + RLG+SY FE+EI     ++  +   N N N  LYATAL+FR+LRQYG+  P +E F+ F + K G FK +  +D    +               SI  +A  FTT  L ++      + N+   +  LV HALE+PL WR+ R EA+WFI ++YE   DMNP LL
Sbjct:   77 RRSANYGPPIWSFDFVQSLPIQYKGESYTSRLNKLEKDVKRML-----IGVENSLAQLELIDTIQRLGISYRFENEIISILKEKFTNNNDNPNPNYDLYATALQFRLLRQYGFEVP-QEIFNNFKNHKTGEFKANISNDIMGAL--GLYEASFHGKKGESILEEARIFTTKCLKKYKLMSSSNNNNMTLISLLVNHALEMPLQWRITRSEAKWFIEEIYERKQDMNPTLL 298          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.495e-39
Identity = 97/248 (39.11%), Postives = 149/248 (60.08%), Query Frame = 3
Query:  123 QYPMAASTTSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN-----KSLYATALKFRILRQYGYNTPV-KESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 848
            +Y       S K  + T+ RRSA+Y P+IW  D++QSL+S Y  E+Y R+ E+L+ +V   ++       ++PL QL+LIDNL RLG+++ FE EI+  L+ I+N N +     ++LYAT+L+FR+LRQ+GY  PV +E F+ F D++G F      D+ KG+               SI  +A +FT+ +L E +   +++  +D ++    K ALELPLHW++  LEARWFI +YE   D N +LL
Sbjct:   34 KYKPVQCLISAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDEAYKRRAEELRGKVKIAIKDV-----IEPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKENLYATSLEFRLLRQHGY--PVSQEVFNGFKDDQGGFIC----DDFKGILSLHEASYYSLEG-ESIMEEAWQFTSKHLKEVMISKNME--EDVFVAEQAKRALELPLHWKVPMLEARWFIHIYERREDKNHLLL 267          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.107e-37
Identity = 103/281 (36.65%), Postives = 160/281 (56.94%), Query Frame = 3
Query:   15 MALNLLSSLPAVCNFTRLSLPLSSKVNGFVPPITRVQYPMAASTTSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNT---NKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKND-DEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPIL 845
            +++N+   L ++ NF R   P  +       P  R++     +++S++      IRRS DY P++W F+YIQSL++ YK + +  +  +L  QV  +L+     V ++ + QL+LID+L  LG+SY F+DEIK+ L  IHN+     N  LY TAL FRILRQ+G+N   ++ F  F  EK S   ++ + + KGM               ++   A RF+T  L E   K D   ++ DE L + ++H+L+LPLHWR++ LEARWF+D Y   PDMNP++
Sbjct:    4 ISINIAMPLNSLHNFERK--PSKAWSTSCTAPAARLR-----ASSSLQQEKPHQIRRSGDYQPSLWDFNYIQSLNTPYKEQRHFNRQAELIMQVRMLLK-----VKMEAIQQLELIDDLQYLGLSYFFQDEIKQILSSIHNEPRYFHNNDLYFTALGFRILRQHGFNVS-EDVFDCFKIEKCSDFNANLAQDTKGMLQLYEASFLLREGEDTL-ELARRFSTRSLRE---KFDEGGDEIDEDLSSWIRHSLDLPLHWRVQGLEARWFLDAYARRPDMNPLI 267          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.146e-34
Identity = 95/260 (36.54%), Postives = 141/260 (54.23%), Query Frame = 3
Query:  108 PITRVQYPMAASTTSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNK-----------SLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDE--YLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 848
            P  + Q      T S  P    + RRSA+Y P++W  +Y+ SL + Y  E    ++  LK++VS ML +   +     L QL+LID L RLGVSYHFE EIK+TL  +H KN               LYATAL+FR+LRQ+G++   ++ F       G+  +     + KG+              + + +++I +TT  L ++V   +++KN+ +   L  +V HALE+P H R+ RLEARW+I+VY    DMNPILL
Sbjct:    2 PKRQAQRRFTRKTDSKTPSQPLVSRRSANYQPSLWQHEYLLSLGNTYVKEDNVERVTLLKQEVSKMLNETEGL-----LEQLELIDTLQRLGVSYHFEQEIKKTLTNVHVKNVRAHKNRIDRNRWGDLYATALEFRLLRQHGFSI-AQDVFD------GNIGVDLDDKDIKGILSLYEASYLSTRIDTKL-KESIYYTTKRLRKFV---EVNKNETKSYTLRRMVIHALEMPYHRRVGRLEARWYIEVYGERHDMNPILL 245          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 99/279 (35.48%), Postives = 147/279 (52.69%), Query Frame = 3
Query:   54 NFTRLSLPLSSKVNGFVPPITRVQYPMAASTT------SIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNT--------NKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKND-DEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPIL 845
            N + LS PL+   N    P   +  P  A T       S K  +   IRRS +Y P +W  +YIQSL++ Y  E +  +  +L  QV  +L++      ++P+ QL+LI +L  LG+S  F+DEIK  L  I+N++            LY TAL FR+LRQ+G+N   ++ F+ F +EKG    +S + + KGM               ++   A  F T  L +   K D   N+ DE L   ++H+L+LPLHWR++ +EARWFID Y   PDMNP++
Sbjct:    7 NVSILSKPLNCLHNLERRPSKALLVPCTAPTARLRASCSSKLQEAHQIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEK-----MEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNIS-QDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL-ELAREFATKCLQK---KLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLI 275          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 87/252 (34.52%), Postives = 134/252 (53.17%), Query Frame = 3
Query:  141 STTSIKPVDQTII---RRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNK--------NTNKSLYATALKFRILRQYGYNTPVKESFSRFMD--EKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHD---IDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 848
            S T   P D T++   RRS +Y P+ W+  Y+ S+++KY  E+     + LK++V +ML  + K      L QL+LID+L +LGVSYHFE EI  TL  +H K        +  + L+AT+L+FR+LRQ+G++   +  F   +D  E  +FK    ++   G+              + + +    F T  + ++V   D   I+  +  Y      HALE+P HWRMRRL+ RW+ID YE   DMN +L+
Sbjct:   32 SMTKTTP-DTTLVELSRRSGNYQPSPWNHCYLLSIENKYASETEVITRDVLKKKVKSMLDDEKK----SRLEQLELIDDLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEEDLHATSLEFRLLRQHGFDVS-ENIFDVIIDQIESNTFK----TNNINGIISLYEASYLSTKSDTKLHKVIRPFATEQIRKFVDDEDTKNIEVREKAY------HALEMPYHWRMRRLDTRWYIDAYEKKHDMNLVLI 267          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.193e-29
Identity = 81/226 (35.84%), Postives = 126/226 (55.75%), Query Frame = 3
Query:  180 RRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDR---IHNKNTNKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 848
            RR+  Y PT+W F  IQ  DS+YK E +  +   +  QV+ +LQ++     +D + +L+LID+L RLG+S HF+ EI   L+     +N+     LY+TAL+F++LRQY ++   +E F  F ++KG+    S  D+ +G+               ++   A  F T +L + V    +DK  D  L + ++ ALELP HWR++   AR FID Y+  PDMNP +L
Sbjct:   57 RRTGGYQPTLWDFSTIQLFDSEYKEEKHLMRAAGMIAQVNMLLQEE-----VDSIQRLELIDDLRRLGISCHFDREIVEILNSKYYTNNEIDESDLYSTALRFKLLRQYDFSVS-QEVFDCFKNDKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLHL-ARDFATKFLHKRVL---VDK--DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVL 270          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.227e-28
Identity = 85/248 (34.27%), Postives = 124/248 (50.00%), Query Frame = 3
Query:  132 MAASTTSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKN--------TNKSLYATALKFRILRQYGYNTPVKESFSRFMD--EKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPIL 845
            M  +     P+D  + RRS +Y P+ W   Y+ S+++KY  E        LK++V  ML++   V     L +L+LID+L +LGVSYHFE EI   L   H +N          + L+ATAL+FR+LRQ+G+    ++ F   +D  E  +FK    SD    +              + + +    F T  +  +V   D  +  +  L  +  HALE+P HWRMRRLE RW+ID YE   DMN  L
Sbjct:   33 MTKTMPDANPLD--LRRRSGNYQPSSWDHSYLLSIENKYVNEKEVITRHVLKKKVKKMLEE---VETKSRLEKLELIDDLQKLGVSYHFEQEINNILTNFHLENGKNIWKCDKEEDLHATALEFRLLRQHGFGVS-EDIFDVIIDKIESNTFK----SDNITSIITLYEASYLSTKSDTKLHKVIRPFATEQIRNFV--DDESETYNIMLREMAIHALEIPYHWRMRRLETRWYIDAYEKKHDMNLFL 268          
The following BLAST results are available for this feature:
BLAST of FC929604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
MYRS_QUEIL1.591e-5245.92Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS2_CANSA2.013e-4743.70(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
TPS1_CANSA5.310e-4043.04(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
RLC1_CITLI4.495e-3939.11(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
SSS_SALOF1.107e-3736.65(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
OCIS_ARATH1.146e-3436.54(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]
BPPS_SALOF6.951e-3235.48(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]
CINS_ARATH1.449e-2934.521,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
SCS_SALOF7.193e-2935.841,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
MYRS2_ARATH1.227e-2834.27Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DD01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929604 ID=FC929604; Name=FC929604; organism=Citrus clementina; type=EST; length=849bp
TTATATTCTAAGTCATGGCTCTTAATCTGCTATCTTCACTACCTGCGGTA
TGCAATTTCACCAGATTATCATTACCATTATCAAGCAAAGTTAATGGCTT
TGTTCCTCCTATTACTCGAGTCCAATATCCCATGGCTGCATCCACTACTT
CTATTAAGCCTGTCGATCAAACCATTATTAGGCGATCTGCCGATTACGGG
CCAACCATTTGGAGTTTTGATTATATTCAATCACTTGACAGTAAATATAA
GGGAGAATCGTATGCCAGACAATTGGAAAAGCTGAAGGAACAAGTAAGCG
CGATGCTACAGCAGGATAATAAAGTGGTGGATTTGGATCCTTTACATCAA
CTTGACCTCATCGATAATCTGCACAGACTTGGAGTATCTTATCACTTTGA
GGATGAAATAAAAAGAACTTTGGATAGGATACACAACAAGAATACTAATA
AAAGTTTATATGCCACAGCACTCAAATTTAGAATCCTAAGGCAATATGGT
TACAATACACCTGTAAAAGAAAGTTTTTCACGTTTCATGGATGAGAAGGG
GAGCTTTAAGTTATCAAGCCACAGTGACGAATGCAAAGGAATGTTAGCTC
TGTATGAAGCTGCATACCTCCTGGTAGAAGAAGAAAGCAGTATCTTTCGT
GACGCTATAAGGTTCACCACCGCATATCTCANAGAATGGGTGGCCAAGCA
TGATATTGACAAAAATGATGATGAATATCTTTGTACATTAGTGAAACATG
CTTTGGAACTTCCACTACATTGGAGGATGCGAAGATTGGAGGCAAGGTGG
TTCATCGATGTATACGAAAGTGGACCAGACATGAACCCTATCTTGCTCG
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