FC929606

Overview
NameFC929606
Unique NameFC929606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929606_ssr290 microsatellite FC929606_ssr290:290..301. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig16 contig Ccv1_Contig16:604..1410. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929606 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.102e-39
Identity = 75/147 (51.02%), Postives = 101/147 (68.71%), Query Frame = 2
Query:  368 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVLRSWMKCEGMNHPRCLFGSSSLGSIA 808
            S +L+PG+  D +L+CL     +DY S+  +N+    LI+SG +Y LR+  G +EHWVY  C    WEAFDP  K+WM LP +P +ECF +ADKESLAVG++LLVFG E+  + I++YSL+  SW   + MN PRCLFGS+S G IA
Sbjct:   68 SGTLIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVYFSCHLNEWEAFDPRSKRWMHLPSMPQNECFRYADKESLAVGTDLLVFGWEVSSYVIYRYSLLTNSWSTAKSMNMPRCLFGSASYGEIA 214          
BLAST of FC929606 vs. ExPASy Swiss-Prot
Match: FBK29_ARATH (F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.791e-35
Identity = 70/140 (50.00%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  389 LVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVLRSWMKCEGMNHPRCLFGSSSLGSIA 808
            L  +  LNCLA    SD+ S+   N+ F  LIK   LY LR+  GIVEHW+Y  C    WEA+DP   +W+ +PK+  +ECF  +DKESLAVG+ELLVFG+E+    I++YS++  +W     MN PRCLFGS+SLG IA
Sbjct:   99 LDQNALLNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLRRAKGIVEHWIYFSCRLLEWEAYDPNGDRWLRVPKMTFNECFMCSDKESLAVGTELLVFGKEIMSHVIYRYSILTNTWTSGMQMNVPRCLFGSASLGEIA 238          
BLAST of FC929606 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.067e-34
Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  341 NDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF-DFAIWKYSLVLRSWMKCEGMNHPRCLFGSSSLGSIA 808
            ND       S SL+  +  D +++CL     SDY S+  +N+ F  L+KSG +Y LR+Q G VEHWVY  C    W AFDP++++WM LP +P    F  ADKESLAVG++LLV G++ F    I++YSL+  SW     MN PRCLFGS+SLG IA
Sbjct:  105 NDNGGDSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQNGFVEHWVYFSCQLLEWVAFDPVERRWMQLPTMPSSVTFMCADKESLAVGTDLLVLGKDDFSSHVIYRYSLLTNSWSSGMKMNSPRCLFGSASLGEIA 261          
BLAST of FC929606 vs. ExPASy Swiss-Prot
Match: FBK70_ARATH (F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.161e-19
Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  380 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVLRSWMKCEGMNHPRCLFGSSSLGSI 805
            +P LV ++ +  LA     +Y  L  +NK F +L+KS  ++ +R++ G+VE  V+++      W  FD        LP++P D CF H DKESL  G+ L+V G+E    A+W+Y L    W K   M  PR LF S++ G++
Sbjct:   71 VPQLVYELEVEILARVPRFEYWKLKLLNKGFSRLLKSDEIFKVRRERGVVEPSVFMLSSGDTCWTMFDKGFGNCQKLPELPSDICFLHGDKESLCAGTHLIVTGKEEKSIALWRYELETSKWFKGPAMITPRILFASATCGTV 213          
BLAST of FC929606 vs. ExPASy Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 2
Query:  377 LLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPR----GWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFG 688
            LLPGL DD+A+ CL     +++  L  + KR+++L    + Y  RK LG+ E WVY+    R     W  FDP+ + W  LP +P +  ++ A     AV  G  L +FG
Sbjct:   78 LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPRE--YSEAVGFGCAVLSGCHLYLFG 185          
The following BLAST results are available for this feature:
BLAST of FC929606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FBK15_ARATH1.102e-3951.02F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
FBK29_ARATH4.791e-3550.00F-box/kelch-repeat protein At1g74510 OS=Arabidopsi... [more]
SKI11_ARATH1.067e-3447.77F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
FBK70_ARATH2.161e-1935.66F-box/kelch-repeat protein At3g27150 OS=Arabidopsi... [more]
FBK22_ARATH6.302e-1135.45F-box/kelch-repeat protein At1g55270 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2DD03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929606 ID=FC929606; Name=FC929606; organism=Citrus clementina; type=EST; length=808bp
GAGAGATGCTTATAAATGAGTCATGTGCTAAGTTTTATGGAAAGAATATA
TAGGCTGGAGGTTCATTGTGTGCAAAGATCGGAATTTGTTTTCTGGTTAT
TGGGAGCGTCATTGAGAATTGTGGGTTGACACTTTCTTTTATCTTTTTAA
ATTTTAATCAAGATTGACTTTTTTTTTTTTATAGAAATTTTGCTTGATTT
TGTTGGATTATAGGAAAAGAATTTTTTTTCTCCCTTTTAACATGATAAAG
AAAGCGCGTTTGGATGATATTATGGAGGAAGTAGAAAAGGAAGAAGAAGA
AGCAGCTAGTTTATCAGTAGTGAGTTGGAAAGCGGGAGTGAATGATGGTT
GTTGTCGGATTGGACCAAGTGATTCACTTCTCCCTGGTCTTGTTGATGAT
GTTGCTTTGAACTGTCTTGCTTTTGCATGTACATCCGACTATGCATCATT
GTTATTTATAAATAAGAGGTTTCATAAGTTAATCAAGAGTGGGTATTTGT
ATGGGTTAAGGAAGCAATTGGGTATTGTGGAGCATTGGGTCTACTTGGTT
TGTGATCCACGGGGTTGGGAGGCATTCGATCCAATGAAAAAGAAGTGGAT
GGCTTTGCCTAAGATCCCTTGTGATGAGTGTTTCAACCATGCAGATAAAG
AGTCCTTGGCTGTGGGTAGTGAATTGTTGGTTTTTGGGCGTGAATTGTTT
GATTTTGCAATTTGGAAGTATAGCTTGGTTCTCCGTAGTTGGATGAAGTG
TGAGGGAATGAACCACCCTCGTTGCTTGTTTGGCTCAAGTAGTCTTGGTT
CTATTGCT
back to top