FC929650

Overview
NameFC929650
Unique NameFC929650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length878
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11159 contig Ccv1_Contig11159:541..1418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929650 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.001e-12
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 3 
Query:  480 RPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT---------SVPTVTYEGRFEILCLSGSFL 815
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G DIV  + +++++R R V +L G GTVS+VTLRQP T             VT  GRFEIL L+G+ L
Sbjct:   72 RPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVL 190
The following BLAST results are available for this feature:
BLAST of FC929650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH1.001e-1239.34Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2DF03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929650 ID=FC929650; Name=FC929650; organism=Citrus clementina; type=EST; length=878bp
CTCGTGCCTTTTTCGGCACGAGGGTGTTAGGGAGATCAGGATCTTGTGTG
TATTTAGTTTAAGATTTTAGCTTAAGTGGCTTAATAGACTCATTTTCTAG
CTACCCAAAAAGAAAAAAAATTCATTTTCTACTTAGTAAATGCATGGACG
GAAGAGAAGCTATGGTTGCATCAGGGGGTGTCTCTGGTCCCTATTACATT
CAACAACATAGAGGAGCATTCAGTGGTTCTCATTCAGCAACACAATCTGG
TTTAATGCAAACCCCACCTGGGTTTAGATCCTCGTCAAATCTTAACATTC
CAACTCAACCAAATGTGGGATCGACATTTGCAGTTGAGCCCAAACATGTC
AATTTTGGCCATAACATGAGTGTGCCATCCGGGGTGCCACTAAGTGATCC
AGTGAAGAAGAAGAGAGGTAGACCCCGCAAATATGCCCCTGATGGGCAGG
TTTCCTTGGGGCTTTCGCCATTGCCAGCCAGGCCAAAGCGTTCTCCGGCA
TCTGATTCGCAGGCCTTGAAACGGAGTAGAGGGCGGCCTCCTGGGACAGG
CAGGAAGCAGCAGTTGGCTACTCTTGGTGAATGGATGAATAGTTCAGCTG
GAATTGCTTTTGCACCGCATGTGATCTCCATTGGAGTTGGAGAGGACATT
GTGGCTAAAATGTTGTCATTTTCACAACAGAGGCCAAGGGTTGTGTGCAT
CTTGTCAGGCCGTGGTACAGTTTCTTCAGTAACACTCCGTCAGCCTGCAA
CTTCAGTGCCCACCGTCACCTATGAGGGCCGTTTCGAGATATTATGCCTG
TCTGGTTCATTCTTACTTGCTGAAGATGGCAGTCCTCGTGATCGAACTGG
TGGTGTAAGTGCCTCCCTTTCAAGTCCT
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