FC929692

Overview
NameFC929692
Unique NameFC929692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929692_ssr137 microsatellite FC929692_ssr137:137..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9267 contig Ccv1_Contig9267:2..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.230e-54
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = -1
Query:  409 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 597
            PITGTGINPARSFGAAVIYN EKAWDDQWIFWVGP IGA  AAFYHQ+ILRAAAIKALGSF S
Sbjct:  221 PITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALGSFGS 283          

HSP 2 Score: 98.9821 bits (245), Expect = 2.230e-54
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:  639 ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVLAPLP 788
            ANELADGYNKGTGLGAEIIGTFVLVYTVFSATD KR+ARDSHVPVLAPLP
Sbjct:  158 ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLP 207          

HSP 3 Score: 34.6538 bits (78), Expect = 2.230e-54
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  207 PIGFAVFMVHLATIP 221          
BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.780e-54
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = -1
Query:  403 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 597
            PITGTGINPARSFGAAVIYN EKAWDDQWIFWVGPF+GA  AA YHQYILRA+AIKALGSFRSNA
Sbjct:  214 PITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALGSFRSNA 278          

HSP 2 Score: 92.0485 bits (227), Expect = 3.780e-54
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = -2
Query:  639 ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVLAPLP 788
            AN +ADGY+KGT LGAEIIGTFVLVYTVFSATD KRSARDSH+PVLAPLP
Sbjct:  151 ANTVADGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLP 200          

HSP 3 Score: 34.6538 bits (78), Expect = 3.780e-54
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  200 PIGFAVFMVHLATIP 214          
BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.159e-52
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = -1
Query:  403 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 597
            P+TGTGINPARS GAAVIYNK+K WDD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  226 PVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          

HSP 2 Score: 91.6633 bits (226), Expect = 1.159e-52
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = -2
Query:  639 ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVLAPLP 788
            AN LA GY++GTGLGAEIIGTFVLVYTVFSATD KR+ARDSHVPVLAPLP
Sbjct:  163 ANSLASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLP 212          

HSP 3 Score: 34.6538 bits (78), Expect = 1.159e-52
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  212 PIGFAVFMVHLATIP 226          
BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.629e-52
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = -1
Query:  403 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 597
            P+TGTGINPARSFG AVI+N +KAWDDQWI+WVGPF+GA VAA YHQYILR +AIKALGSFRSNA
Sbjct:  223 PVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA 287          

HSP 2 Score: 90.5077 bits (223), Expect = 5.629e-52
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  639 NELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVLAPLP 785
            N ++DGYNKGT LGAEIIGTFVLVYTVFSATD KR+ARDSHVPVLAPLP
Sbjct:  161 NTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLP 209          

HSP 3 Score: 34.6538 bits (78), Expect = 5.629e-52
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  209 PIGFAVFMVHLATIP 223          
BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.528e-52
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = -1
Query:  403 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 597
            P+TGTGINPARS GAAV+YNK+K WDD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  228 PVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALGSFRSNA 292          

HSP 2 Score: 89.3521 bits (220), Expect = 9.528e-52
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = -2
Query:  639 ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVLAPLP 788
            AN LA GY++G GLGAEI+GTFVLVYTVFSATD KR+ARDSHVPVLAPLP
Sbjct:  165 ANSLASGYSRGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLP 214          

HSP 3 Score: 34.6538 bits (78), Expect = 9.528e-52
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  214 PIGFAVFMVHLATIP 228          
BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.241e-51
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = -1
Query:  406 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 597
            PITGTGINPARSFGAAVIYNK++ WDD WIFWVGPF+GA  AA YHQY+LRAAAIKALGSFRSN
Sbjct:  216 PITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALGSFRSN 279          

HSP 2 Score: 88.1965 bits (217), Expect = 1.241e-51
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = -2
Query:  639 ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVLAPLP 788
            AN +A GYNKGT  GAE+IGTFVLVYTVFSATD KRSARDSHVP+LAPLP
Sbjct:  153 ANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLP 202          

HSP 3 Score: 34.6538 bits (78), Expect = 1.241e-51
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  202 PIGFAVFMVHLATIP 216          
BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.731e-51
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = -1
Query:  403 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 597
            PITGTGINPARS GAAVI+N EKAW + WIFWVGPF+GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  226 PITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          

HSP 2 Score: 89.3521 bits (220), Expect = 2.731e-51
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = -2
Query:  639 ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVLAPLP 788
            AN LA GY+KGTGL AEIIGTFVLVYTVFSATD KR+ARDSHVPVLAPLP
Sbjct:  163 ANTLAAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLP 212          

HSP 3 Score: 34.6538 bits (78), Expect = 2.731e-51
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  212 PIGFAVFMVHLATIP 226          
BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.732e-51
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = -1
Query:  403 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 597
            PITGTGINPARS GAAVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  225 PITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK-LGSYRSNA 288          

HSP 2 Score: 94.7449 bits (234), Expect = 2.732e-51
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:  639 ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVLAPLP 788
            ANEL+DGY+KGTGL AEIIGTFVLVYTVFSATD KRSARDSHVPVLAPLP
Sbjct:  162 ANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 211          

HSP 3 Score: 34.6538 bits (78), Expect = 2.732e-51
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  211 PIGFAVFMVHLATIP 225          
BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.732e-51
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = -1
Query:  403 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 597
            PITGTGINPARS GAAVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  226 PITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK-LGSYRSNA 289          

HSP 2 Score: 94.7449 bits (234), Expect = 2.732e-51
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:  639 ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVLAPLP 788
            ANEL+DGY+KGTGL AEIIGTFVLVYTVFSATD KRSARDSHVPVLAPLP
Sbjct:  163 ANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 212          

HSP 3 Score: 34.6538 bits (78), Expect = 2.732e-51
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  212 PIGFAVFMVHLATIP 226          
BLAST of FC929692 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.626e-51
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = -1
Query:  403 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 597
            PITGTGINPARS G AVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  225 PITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK-LGSYRSNA 288          

HSP 2 Score: 95.5153 bits (236), Expect = 4.626e-51
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = -2
Query:  639 ANELADGYNKGTGLGAEIIGTFVLVYTVFSATDXKRSARDSHVPVLAPLP 788
            ANEL+DGY+KGTGLGAEIIGTFVLVYTVFSATD KR+ARDSH+PVLAPLP
Sbjct:  162 ANELSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLP 211          

HSP 3 Score: 34.6538 bits (78), Expect = 4.626e-51
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  596 PIGFAVFMVHLATIP 640
            PIGFAVFMVHLATIP
Sbjct:  211 PIGFAVFMVHLATIP 225          
The following BLAST results are available for this feature:
BLAST of FC929692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
PIP24_ARATH2.230e-5490.48Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP27_ARATH3.780e-5490.77Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP21_MAIZE1.159e-5284.62Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP27_MAIZE5.629e-5283.08Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP22_MAIZE9.528e-5283.08Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP1_ATRCA1.241e-5185.94Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP21_ORYSJ2.731e-5184.62Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP24_MAIZE2.732e-5183.08Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE2.732e-5183.08Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP22_ORYSJ4.626e-5181.54Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1BB03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929692 ID=FC929692; Name=FC929692; organism=Citrus clementina; type=EST; length=789bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGGA
TGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTGC
CAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTANGATCAGTGGCAG
AGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGT
CCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCC
back to top