FC929714

Overview
NameFC929714
Unique NameFC929714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length876
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929714_ssr12 microsatellite FC929714_ssr12:12..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14184 contig Ccv1_Contig14184:128..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929714 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.087e-28
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  298 PMGSCYNPNTDQAHCNYAVDSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 450
            P GSC+NP+  +AHCNYAV+S+FQ+KGQA  SC+F+G+AT+ TTDPS  GC
Sbjct:   52 PKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGC 102          

HSP 2 Score: 63.929 bits (154), Expect = 2.087e-28
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 2
Query:  188 HSTANWCVCKDGVGDPVLQKALDYACGAGADCNP 289
            H++A+WCVCK G+ D VLQK LDYACG GADCNP
Sbjct:   16 HTSASWCVCKTGLSDSVLQKTLDYACGNGADCNP 49          
BLAST of FC929714 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.987e-26
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 1
Query:  298 PMGSCYNPNTDQAHCNYAVDSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 450
            P  SC+NP+  ++HCNYAV+S+FQ+KGQ+ GSC+F G+AT   +DPS  GC
Sbjct:   52 PKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGC 102          

HSP 2 Score: 62.7734 bits (151), Expect = 8.987e-26
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 2
Query:  188 HSTANWCVCKDGVGDPVLQKALDYACGAGADCNP 289
            HS+A+WCVCK G+ D VLQ  LDYACG GADCNP
Sbjct:   16 HSSASWCVCKTGLSDTVLQATLDYACGNGADCNP 49          
BLAST of FC929714 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.424e-18
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  298 PMGSCYNPNTDQAHCNYAVDSYFQRKGQAQGSCDFSGSATVATTDPSTA 444
            P G+CY PNT + HC+ AV+SY+Q+K  +  +CDF+G+A+ +TT PSTA
Sbjct:   51 PTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTA 99          

HSP 2 Score: 46.9802 bits (110), Expect = 1.424e-18
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 2
Query:  188 HSTANWCVCKDGVGDPVLQKALDYACGAGADC 283
            +S A +C+CK+G  + VLQKA+DYACG GADC
Sbjct:   16 YSNAAYCLCKEG-NEQVLQKAIDYACGNGADC 46          
BLAST of FC929714 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 2.297e-14
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query:  298 PMGSCYNPNTDQAHCNYAVDSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 450
            P  SCY PN  + H ++A +SY+Q++G+A GSCDF G A + TTDPS   C
Sbjct:  304 PGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSC 354          

HSP 2 Score: 32.7278 bits (73), Expect = 2.297e-14
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  203 WCVCKDGVGDPVLQKALDYACGAG 274
            +C+  DGV    LQ ALD+ACG G
Sbjct:  272 YCIAMDGVDAKTLQAALDWACGPG 295          
BLAST of FC929714 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 1.098e-13
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:  307 SCYNPNTDQAHCNYAVDSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 450
            SCY P+   AH  YA ++Y+Q+ G+A GSCDF G ATV TTDPS   C
Sbjct:  395 SCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSRGTC 442          

HSP 2 Score: 31.9574 bits (71), Expect = 1.098e-13
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2
Query:  203 WCVCKDGVGDPVLQKALDYACGAG-ADCN 286
            +C+ K+ V   +LQ ALD+ACG G  DC+
Sbjct:  360 FCIAKEKVDRKMLQAALDWACGPGKVDCS 388          
BLAST of FC929714 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 5.285e-13
Identity = 21/49 (42.86%), Postives = 34/49 (69.39%), Query Frame = 1
Query:  304 GSCYNPNTDQAHCNYAVDSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 450
            G+C++PN+ QAH +Y +++Y+Q  G    +CDF G+  V ++DPS  GC
Sbjct:  409 GACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGC 457          

HSP 2 Score: 35.4242 bits (80), Expect = 5.285e-13
Identity = 15/29 (51.72%), Postives = 17/29 (58.62%), Query Frame = 2
Query:  203 WCVCKDGVGDPVLQKALDYACGAGADCNP 289
            WCV KDG     LQ  ++YACG   DC P
Sbjct:  377 WCVAKDGANGTDLQNNINYACGF-VDCKP 404          
BLAST of FC929714 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 9.330e-12
Identity = 21/51 (41.18%), Postives = 31/51 (60.78%), Query Frame = 1
Query:  298 PMGSCYNPNTDQAHCNYAVDSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 450
            P G+C+ PN   +H  YA++ YFQ+  +    CDFS +ATV + +PS   C
Sbjct:  395 PGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPSYNNC 445          

HSP 2 Score: 38.5058 bits (88), Expect = 9.330e-12
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 2
Query:  191 STANWCVCKDGVGDPVLQKALDYACGAGADC 283
            +++ WCV K G  +  LQ +LD+ACG G DC
Sbjct:  360 TSSGWCVPKKGATNEELQASLDWACGHGIDC 390          
BLAST of FC929714 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 1.211e-11
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1
Query:  307 SCYNPNTDQAHCNYAVDSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 450
            +CY P+   AH NYA D+Y+ + G    +C+F+G A++ TTDPS   C
Sbjct:  403 TCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPSHGTC 450          

HSP 2 Score: 34.2686 bits (77), Expect = 1.211e-11
Identity = 14/30 (46.67%), Postives = 20/30 (66.67%), Query Frame = 2
Query:  203 WCVCKDGVGDPVLQKALDYACGAG-ADCNP 289
            +C  ++G    +LQ ALD+ACG G  DC+P
Sbjct:  368 YCTAREGADTKMLQAALDWACGPGKIDCSP 397          
The following BLAST results are available for this feature:
BLAST of FC929714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
E13L3_ARATH2.087e-2864.71Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L2_ARATH8.987e-2656.86Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L4_ARATH1.424e-1853.06Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E131_ARATH2.297e-1450.98Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E133_ARATH1.098e-1356.25Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E13B_WHEAT5.285e-1342.86Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E137_ARATH9.330e-1241.18Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E132_ARATH1.211e-1143.75Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH1BD05RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929714 ID=FC929714; Name=FC929714; organism=Citrus clementina; type=EST; length=876bp
GAACTTTTTCATCTCTCTCTCAGTCCCTCTCAAAGGCCTCACCTTAACTG
CTGTGAGTGTTGTGACAAACTTTTCTCGGAGACAAACAATCAAGTATTTG
TTATTATTATCTCTTCTCTAATCTTCTTTTGCTCAATCAATGATGGCTGT
TTTGGTGCTTTTAACTCTCTTCCTTGGCTTCACTGGGCATTCAACTGCAA
ACTGGTGTGTTTGCAAAGATGGAGTGGGTGACCCAGTTTTACAAAAAGCT
TTGGACTATGCTTGTGGAGCTGGGGCTGATTGTAACCCTTATCCATTCCA
ATGGGCTCTTGTTACAACCCCAACACTGATCAAGCTCACTGCAATTATGC
TGTCGACAGCTATTTCCAGAGAAAGGGTCAAGCTCAAGGCTCTTGTGATT
TTTCCGGAAGTGCAACCGTTGCCACTACCGATCCCAGCACTGCTGGCTGT
TCTTATCCTTCAAGTGCCAGCACTTCAGGCACCACCTCAACAACACCAGT
CACAGGTACTCCAGGCACAACCACACCCACAACAACTCCGTCCACTACCA
CTCCAACGACTAACACACCAGGCAGCACCACACCAGGCAGCACCACTCCG
GGCAGCACCACTCCGTACACCACCACACCATCAACTGGAACTGGAGTGTT
GGGAGGAGTTGGTCCTGGTTTACGCCCTTCGGGATCTGGTATGCCCAACA
CAGACTATAGTCATGGTGGGATGAGACTGCAAAACTCTGCCTTGTCTTTT
TTGGTCGTCCTCTTGTTCTCAGGCTCGATGCTCTTGTGGGGTTGAAAGAA
ACAATCAACATGACATCTACTAGGATGGAGATGTGGTACTATAGTCAGTG
TCCTTGATGCTGGATCTCCATGTGCA
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