FC929725

Overview
NameFC929725
Unique NameFC929725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1519..2169. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.043e-53
Identity = 98/135 (72.59%), Postives = 117/135 (86.67%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+F+L+P++F+P GLIQLHAMRYGT+PI ASTGGLVDTV EGFTGF MG+F+V+C  VDP DV  ++TTV RALA YG+ A  EM++N MAQDLSWKGPAK WE+ LL+L V+GSEPG+DGEEIAPLAKENVATP
Sbjct:  474 ADFMLVPSRFEPCGLIQLHAMRYGTIPICASTGGLVDTVTEGFTGFHMGAFNVECATVDPADVQKIATTVERALAAYGSVAYKEMIQNCMAQDLSWKGPAKNWEKMLLSLGVSGSEPGVDGEEIAPLAKENVATP 608          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.853e-52
Identity = 96/135 (71.11%), Postives = 116/135 (85.93%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+F+L+P++F+P GLIQLHAMRYGTVPI ASTGGLVDTV+EG+TGF MG+F+V+C+ VDP DV  + TTV RALA YGT A AEM+KN M+++LSWK PAKKWE  LL L  +GSEPG++GEEIAPLAKENVATP
Sbjct:  473 ADFMLVPSRFEPCGLIQLHAMRYGTVPICASTGGLVDTVKEGYTGFHMGAFNVECDVVDPADVLKIVTTVARALAVYGTLAFAEMIKNCMSEELSWKEPAKKWETLLLGLGASGSEPGVEGEEIAPLAKENVATP 607          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.583e-52
Identity = 97/135 (71.85%), Postives = 115/135 (85.19%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+F+L+P++F+P GLIQLHAMRYGTVPIVASTGGLVDTV+EG+TGFQMG+  V+C+ +D  DVAA+  TV RAL TY T AL EM+ N MAQDLSWKGPA+ WE+ LL+LEV GSEPG +GEEIAPLAKENV TP
Sbjct:  474 ADFMLVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKEGYTGFQMGALHVECDKIDSADVAAIVKTVARALGTYATAALREMILNCMAQDLSWKGPARMWEKMLLDLEVTGSEPGTEGEEIAPLAKENVPTP 608          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.583e-52
Identity = 99/135 (73.33%), Postives = 115/135 (85.19%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+F+LIP++F+P GLIQLHAMRYGT  I ASTGGLVDTV+EG+TGF MG+F+VDCE VDP DV  V TTV RALA YGT A  EM+KN M+Q+LSWKGPAK WE  LL+L VAGSEPG++G+EIAPLAKENVATP
Sbjct:  474 ADFMLIPSRFEPCGLIQLHAMRYGTPCICASTGGLVDTVKEGYTGFHMGAFNVDCETVDPEDVLKVITTVGRALAMYGTLAFTEMIKNCMSQELSWKGPAKNWETVLLSLGVAGSEPGVEGDEIAPLAKENVATP 608          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.606e-50
Identity = 94/135 (69.63%), Postives = 113/135 (83.70%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+FI++P++F+P GLIQLHAMRYGTVPIVASTGGLVDTV++G+TGF +G F+V CE VDP DV A +  V RA+A YGT A+ EM+KN M QD SWKGPA+ WE+ LL+L VAGSE G +GEEIAPLAKENVATP
Sbjct:  476 ADFIIVPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMQEMVKNCMDQDFSWKGPARLWEKVLLSLNVAGSEAGTEGEEIAPLAKENVATP 610          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.515e-48
Identity = 92/135 (68.15%), Postives = 113/135 (83.70%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+FI+IP++F+P GL+QLHAM YGTVPIV+STGGLVDTV+EG+TGF  G F V+CE VDP DV  ++ TV+RAL TYGTQA+ +++ N MAQ+ SWK PAK WE+ LLNLEV G+  GIDG+EIAPLAKENVATP
Sbjct:  469 ADFIVIPSRFEPCGLVQLHAMPYGTVPIVSSTGGLVDTVKEGYTGFHAGPFDVECEDVDPDDVDKLAATVKRALKTYGTQAMKQIILNCMAQNFSWKKPAKLWEKALLNLEVTGNVAGIDGDEIAPLAKENVATP 603          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.675e-47
Identity = 93/135 (68.89%), Postives = 108/135 (80.00%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+FI+IP++F+P GLIQL  M YG VPI +STGGLVDTV EG TGF MGSF+V+ E VDP DVAAV + V RAL  Y T     M++N MAQDLSWKGPAKKWEE LL+L V GS+PGI+GEEIAPLAK+NVATP
Sbjct:  431 ADFIIIPSRFEPCGLIQLQGMSYGVVPICSSTGGLVDTVREGVTGFHMGSFNVEFETVDPTDVAAVGSNVTRALKQYRTPVFHAMVQNCMAQDLSWKGPAKKWEEALLSLGVEGSQPGIEGEEIAPLAKQNVATP 565          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.603e-44
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+ + +P++F+P GLIQL  MRYGT    ASTGGLVDTV EG TGF MG  SVDC+ V+P DV  V+TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGSEPG++GEEIAPLAKENVA P
Sbjct:  472 ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVQKVATTLKRAIKIVGTPAYNEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSEPGVEGEEIAPLAKENVAAP 606          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.917e-43
Identity = 86/135 (63.70%), Postives = 101/135 (74.81%), Query Frame = 2
Query:   17 ANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            A+ + + ++F+P GLIQL  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE  LL+L VAG EPGI+GEEIAPLAKENVA P
Sbjct:  474 ADLLAVTSRFEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAIKVVGTPAYEEMVKNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGIEGEEIAPLAKENVAAP 608          
BLAST of FC929725 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.283e-43
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 2
Query:    2 QIRPKANFILIPTKFKPWGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 421
            Q+   A+ + + ++F+P GLIQL  MRYGT  + ASTGGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE+ LL L V GSEPGI GEEIAPLA ENVA P
Sbjct:  464 QMMAGADLLAVTSRFEPCGLIQLQGMRYGTPCVCASTGGLVDTIVEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAVKVVGTPAYQEMVKNCMIQDLSWKGPAKNWEDVLLELGVEGSEPGIVGEEIAPLAMENVAAP 603          
The following BLAST results are available for this feature:
BLAST of FC929725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SSG1_ANTMA2.043e-5372.59Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU3.853e-5271.11Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES8.583e-5271.85Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA8.583e-5273.33Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH3.606e-5069.63Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_PEA1.515e-4868.15Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU1.675e-4768.89Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_ORYSA8.603e-4464.44Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI1.917e-4363.70Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU7.283e-4361.43Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AA05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929725 ID=FC929725; Name=FC929725; organism=Citrus clementina; type=EST; length=651bp
CCAAATTCGGCCCAAGGCTAATTTTATTTTGATTCCAACCAAATTTAAAC
CTTGGGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATC
GTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGG
ATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAG
ATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGT
ACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTC
ATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAG
TTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCC
AAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTT
ATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTA
CTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAA
TAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATT
AAGTTCTGTTTTACAGTTTTGTAAAAAGGCTCCTGGAGGCTGTCGCCACT
C
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