FC929754

Overview
NameFC929754
Unique NameFC929754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length780
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15284 contig Ccv1_Contig15284:62..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ADS3_ARATH (Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=2 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 7.054e-81
Identity = 133/184 (72.28%), Postives = 159/184 (86.41%), Query Frame = 2
Query:  230 YGRILLSDVLVKRRRSL-FSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLYA 778
            Y RI+LSDVLVK++  + +  R W ++D     VVL+MHLL+L APF F W ++ VAFGLY+VTGLLGITLSFHRNLSH++FKLPKWLEYLFAYCG Q+LQGNPIDWVSTHRYHHQFCDS+RDPHSP++GFWFSHM+W+FD +++ +RCG PNNVGDLEKQPFYRFLR+TYILHP+AL   LYA
Sbjct:   75 YRRIMLSDVLVKKKEKVVWWEREWKAMDFGAVAVVLSMHLLSLLAPFQFNWRAVSVAFGLYIVTGLLGITLSFHRNLSHKAFKLPKWLEYLFAYCGAQALQGNPIDWVSTHRYHHQFCDSDRDPHSPLDGFWFSHMNWMFDTNTITQRCGEPNNVGDLEKQPFYRFLRTTYILHPLALAVALYA 258          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ADS32_ARATH (Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana GN=ADS3.2 PE=2 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 8.391e-58
Identity = 103/180 (57.22%), Postives = 131/180 (72.78%), Query Frame = 2
Query:  236 RILLSDVLVKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLY 775
            R LLS+V+V R +  F  R+W S D+S   + +  HLL+L APF F+W +  V   L  + G+  ITLS+HRNLSHRSF LPKWLEYLFAY GV + QG+PI+WVS HRYHH+ C+++RDPHSP +GFWFSHM+W+FD  S+LE CGG  NV DL +QPFYRFL+ T +LH +A   L Y
Sbjct:   71 RRLLSEVVVVRTKRSFWERSWTSWDVSKLVIFVGTHLLSLLAPFYFSWEAFWVFPWLVFINGIC-ITLSYHRNLSHRSFDLPKWLEYLFAYGGVLAFQGDPIEWVSNHRYHHKHCETQRDPHSPTQGFWFSHMAWIFDTSSILENCGGEENVDDLVRQPFYRFLQRTVLLHMMAYSFLFY 249          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ADS1_ARATH (Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis thaliana GN=ADS1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.103e-57
Identity = 101/171 (59.06%), Postives = 130/171 (76.02%), Query Frame = 2
Query:  263 KRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLY 775
            +++R+++  R W  LDI  A   L +H L L APF FTW +LRVA  +Y V GL GIT+S+HRNL+HRSFK+PKWLEY FAYCG+ ++QG+PIDWVSTHRYHHQF DS+RDPHSP EGFWFSH+ WLFD   ++E+CG   NV DL++Q +Y+FL+ T + H +  G LLY
Sbjct:   24 RKKRAMWE-RKWKRLDIVKAFASLFVHFLCLLAPFNFTWPALRVALIVYTVGGL-GITVSYHRNLAHRSFKVPKWLEYFFAYCGLLAIQGDPIDWVSTHRYHHQFTDSDRDPHSPNEGFWFSHLLWLFDTGYLVEKCGRRTNVEDLKRQWYYKFLQRTVLYHILTFGFLLY 192          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ADS2_ARATH (Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 7.854e-56
Identity = 99/171 (57.89%), Postives = 124/171 (72.51%), Query Frame = 2
Query:  263 KRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLY 775
            K+RR +F  R W  LD         +H LAL APF FTWS+L V F  Y + GL GIT+S+HRNL+HRSFK+PKWLEYL AYC + ++QG+PIDWVSTHRYHHQF DSERDPHSP EGFWFSH+ W++D   ++ +CG   NV DL++Q FYRFL+ T + H + LG  L+
Sbjct:   25 KKRRWVFWDRRWRRLDYVKFSASFTVHSLALLAPFYFTWSALWVTFLFYTIGGL-GITVSYHRNLAHRSFKVPKWLEYLLAYCALLAIQGDPIDWVSTHRYHHQFTDSERDPHSPKEGFWFSHLLWIYDSAYLVSKCGRRANVEDLKRQWFYRFLQKTVLFHILGLGFFLF 194          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ADSL1_ARATH (Delta-9 desaturase-like 1 protein OS=Arabidopsis thaliana GN=At1g06090 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.300e-54
Identity = 99/172 (57.56%), Postives = 125/172 (72.67%), Query Frame = 2
Query:  260 VKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLY 775
            V+  +  F  R W  +DI+ A  V A+HLL L APF + W +LR    L +VT L  IT S+HRNL+H+SFKLPKWLEY FAY  + +LQG+PIDWVSTHR+HHQF DS+RDPHSPIEGFWFSH+ W+FD   + E+CGG +NV DL++Q FYRFLR+T  LH +    L+Y
Sbjct:   16 VRGEKRAFFFRKWTRIDIARASAVGAVHLLCLLAPFNYKWEALRFGVILAIVTSL-SITFSYHRNLTHKSFKLPKWLEYPFAYSALFALQGHPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVFWIFDTSYIREKCGGRDNVMDLKQQWFYRFLRNTIGLHILTFWTLVY 186          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ADSL2_ARATH (Delta-9 desaturase-like 2 protein OS=Arabidopsis thaliana GN=At1g06100 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.139e-53
Identity = 94/172 (54.65%), Postives = 122/172 (70.93%), Query Frame = 2
Query:  260 VKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLY 775
            V++ +  +  R W   D+  A  V  +HLL L APF + W + R    L ++T L  IT S+HRNL+HRSFKLPKWLEY FAY  + +LQG+P+DWVS HR+HHQF DS+RDPHSPIEGFWFSH+ W+FD D + E+CG  NNV DL++Q FYRFL+ T +LH +A   L+Y
Sbjct:   16 VRKEKRAYVLRKWTQFDVGRASTVGTVHLLCLLAPFNYKWEAFRFGIILAILTNLC-ITFSYHRNLTHRSFKLPKWLEYPFAYSALLALQGDPLDWVSIHRFHHQFTDSDRDPHSPIEGFWFSHVLWIFDTDYIREKCGRRNNVMDLKQQWFYRFLKKTLVLHILAFWTLIY 186          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ADSL3_ARATH (Delta-9 desaturase-like 3 protein OS=Arabidopsis thaliana GN=At1g06120 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.223e-53
Identity = 96/172 (55.81%), Postives = 124/172 (72.09%), Query Frame = 2
Query:  260 VKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLY 775
            V++ +  F  R W  +D+     V A+HLL L APF +TW + R A  + + T L  IT S+HRNL+HRSFKLPKWLEY FAY  + +LQG+PIDWVSTHR+HHQF DS+RDPHSPIEGFWFSH+ W+FD   + E+CGG +NV DL++Q FYRFL++T  LH +    L+Y
Sbjct:   16 VRKEKRAFLFRKWTRVDVMRVSAVGAVHLLCLLAPFNYTWEAFRFAAMVGISTNL-SITFSYHRNLTHRSFKLPKWLEYPFAYSALFALQGHPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVFWIFDTSYIREKCGGRDNVMDLKQQWFYRFLQNTIGLHILTFWILVY 186          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ADSL5_ARATH (Delta-9 desaturase-like 5 protein OS=Arabidopsis thaliana GN=At1g06360 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.447e-49
Identity = 93/172 (54.07%), Postives = 117/172 (68.02%), Query Frame = 2
Query:  260 VKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLY 775
            V + +  +  R W+  DI  A  V+ +H L L APF + W +LR  F LY +T L  IT S+HRNL+HRSFKLPKWLEY  AY  V +LQG+P+DWVS HR+HHQF DS+RDPHSPIEGFWFSH+ W+ D   +  +CGG NNV DL++Q FY FLR T   H +    +LY
Sbjct:   16 VSKEKRPYIHREWSWADIIRALTVINVHFLCLLAPFNYKWEALRFGFVLYALTSL-SITFSYHRNLAHRSFKLPKWLEYPLAYFAVFALQGDPLDWVSIHRFHHQFTDSDRDPHSPIEGFWFSHVWWICDTRYIKYKCGGRNNVMDLKQQWFYWFLRMTIGFHVLMFWTVLY 186          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ADSL4_ARATH (Delta-9 desaturase-like 4 protein OS=Arabidopsis thaliana GN=At1g06350 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 7.120e-49
Identity = 93/174 (53.45%), Postives = 120/174 (68.97%), Query Frame = 2
Query:  254 VLVKRRRSLFSGRNWNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIALGGLLY 775
            V   ++R+ F  R W  +D+  A VV+ +H L L APF F W +LR    L+ +T  L IT SFHRNLSHRSFK+PKWLEY +AY  V +LQG+P+DWVS HR+HHQF DS+RDPHSP EG  FSH+ W+FD   +  +CGG +NV DL+KQ FY+FLR T  +H +    +LY
Sbjct:   16 VSTMQKRAYFQ-RQWPLVDVVRASVVVIVHFLCLLAPFNFKWEALRFGLVLFALT-TLSITFSFHRNLSHRSFKIPKWLEYPWAYSAVFALQGDPMDWVSIHRFHHQFTDSDRDPHSPKEGLLFSHILWIFDTQYIKYKCGGRDNVLDLKKQWFYKFLRRTIAVHILMFWTILY 187          
BLAST of FC929754 vs. ExPASy Swiss-Prot
Match: ACO1_SCHPO (Probable acyl-CoA desaturase OS=Schizosaccharomyces pombe GN=SPCC1281.06c PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.385e-17
Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  296 WNSLDISTAGVVLAMHLLALFAPFCFTWSSLRVAFGL--YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIA 757
            W  L+     ++  + ++A++  F     +  + F +  Y  +GL GIT  +HR  SHR++K  K LEY  A  G  + +G+   W   HR HH++ D+++DP++  +GFW++H+ W+    +   R  G ++V DL   PF  F    ++  PIA
Sbjct:   59 WRHLNWLHCMLIFGLPMIAIYGVFTTPLQTKTLIFAIIYYAYSGL-GITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQN--PRRIGRSDVSDLNSDPFVMFNHRHFL--PIA 209          
The following BLAST results are available for this feature:
BLAST of FC929754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ADS3_ARATH7.054e-8172.28Palmitoyl-monogalactosyldiacylglycerol delta-7 des... [more]
ADS32_ARATH8.391e-5857.22Probable lipid desaturase ADS3.2, chloroplastic OS... [more]
ADS1_ARATH7.103e-5759.06Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis tha... [more]
ADS2_ARATH7.854e-5657.89Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis tha... [more]
ADSL1_ARATH3.300e-5457.56Delta-9 desaturase-like 1 protein OS=Arabidopsis t... [more]
ADSL2_ARATH2.139e-5354.65Delta-9 desaturase-like 2 protein OS=Arabidopsis t... [more]
ADSL3_ARATH6.223e-5355.81Delta-9 desaturase-like 3 protein OS=Arabidopsis t... [more]
ADSL5_ARATH2.447e-4954.07Delta-9 desaturase-like 5 protein OS=Arabidopsis t... [more]
ADSL4_ARATH7.120e-4953.45Delta-9 desaturase-like 4 protein OS=Arabidopsis t... [more]
ACO1_SCHPO9.385e-1730.77Probable acyl-CoA desaturase OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF02RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929754 ID=FC929754; Name=FC929754; organism=Citrus clementina; type=EST; length=780bp
AAAATCTTTCACTTTTTCACCTCTGTGTCAAGCAAGAAAAACTCAAACCG
ATAAAGTTCTGGCCTTCGGCAATTCTAACTTACAACACAAGCTAGTAAAA
ACGAGCTTTGTGTATCATGTTTATAAATATAACAAAAGAGAGTCACTAGC
AATTGTTAATGCAGCATCAATTGAATCGACAGAACCAAAGCCAGAGCCAG
AGCCAGAGCAAATTCCCGAAGTGGAAACTTATGGGAGAATTTTGTTATCT
GATGTGTTGGTGAAGAGGAGAAGAAGTTTATTTTCTGGGAGGAATTGGAA
CTCATTGGATATAAGCACAGCTGGTGTTGTTTTGGCAATGCATTTGCTTG
CTCTCTTTGCGCCATTTTGTTTCACGTGGAGTTCTCTTAGGGTTGCTTTT
GGACTTTATGTTGTGACTGGACTTCTGGGTATCACTCTTTCTTTTCACAG
AAACCTTTCTCATAGGAGTTTTAAATTACCCAAATGGCTTGAGTACTTGT
TTGCTTATTGCGGAGTTCAGTCTCTTCAGGGGAATCCAATTGATTGGGTA
AGCACACATAGGTATCATCACCAGTTTTGTGATTCCGAAAGGGATCCGCA
TAGTCCCATTGAAGGGTTTTGGTTTAGTCACATGAGTTGGCTGTTTGATA
AGGATTCTGTTCTCGAAAGGTGTGGAGGGCCAAACAATGTGGGAGATTTA
GAGAAGCAGCCTTTCTATAGATTCTTAAGAAGCACTTACATTCTCCATCC
AATTGCACTTGGAGGCTTGCTATATGCACT
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