FC929785

Overview
NameFC929785
Unique NameFC929785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:20..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.378e-42
Identity = 81/102 (79.41%), Postives = 90/102 (88.24%), Query Frame = 2
Query:   77 MALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            MA+ KAQ+ VSSNSVVVFSKTFCP+C SVK+L  QLG  FK IELD ESDGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H EGKL+PLLTEAGAV
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.057e-42
Identity = 80/106 (75.47%), Postives = 94/106 (88.68%), Query Frame = 2
Query:   77 MALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVAKTA 394
            M+L KA++ VS N V VFSKT+CPFCVSVK+L  +LG TFKA+ELD E DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALH EGKL+PLLTEAGA+AKT+
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.180e-41
Identity = 81/106 (76.42%), Postives = 95/106 (89.62%), Query Frame = 2
Query:   77 MALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVAKTA 394
            MAL KA++TV+S  VVV+SK++CPFCV VK+LF+QLG TFKAIELD ESDGS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.305e-40
Identity = 81/107 (75.70%), Postives = 93/107 (86.92%), Query Frame = 2
Query:   77 MALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVA-KTA 394
            MA+ KA++ V+S SVVVFSKT+CP+CV VKEL QQLG  FKA+ELD ESDGS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH +GKLVPLLTEAGA+A KTA
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.959e-40
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = 2
Query:   77 MALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAV 382
            MA+ K ++ VSSN+VVVFSKT+CP+C SVK+L  QLG  +K +ELD ESDGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.143e-36
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 2
Query:   50 QIKNKKNPKMALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVA 385
            Q++    P MAL KA++ V+S+ VVVFSKT+CPFC  VK L  +L  ++KA+ELD ESDGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H  G LVPLLTEAGA+A
Sbjct:   18 QLEEPSKPVMALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.914e-32
Identity = 66/113 (58.41%), Postives = 86/113 (76.11%), Query Frame = 2
Query:   59 NKKNPKMALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAGAVAKTAA 397
            +K+  ++ + KA++ VS+  VVVFSKT+C +C  VK+L  QLG TFK +ELD+ SDG +IQSAL+EWTGQ TVPNVFI G HIGGCD     + +GKLVPLLTEAGA+A  ++
Sbjct:   11 SKEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.549e-25
Identity = 52/98 (53.06%), Postives = 74/98 (75.51%), Query Frame = 2
Query:   83 LPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEAG 376
            + K +  + ++ +++FSKT CP+C+SVK+LF++L V    +ELD ESDGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:    1 MDKVKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.700e-20
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  101 TVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLLTEA 373
            TV+ N VVV+SKT+C +   VK LF+ L V    +ELD+  S+GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:   81 TVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
BLAST of FC929785 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.700e-20
Identity = 44/100 (44.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   65 KNPKMALPKAQKTVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHGEGKLVPLL 364
            K+    + + Q+T+S+N VV+FSKT C +C   K++F  + V +KA+ELD    G+  Q AL + TG++TVP +F+ G+ IGG   T  LH EGKL+PL+
Sbjct:   44 KSTTTPVNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLV 143          
The following BLAST results are available for this feature:
BLAST of FC929785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
GLRX_VERFO2.378e-4279.41Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GLRX_SOLLC4.057e-4275.47Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GRXC6_ORYSJ1.180e-4176.42Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRXC2_ARATH1.305e-4075.70Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_RICCO4.959e-4074.51Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC4_ORYSJ1.143e-3664.29Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH2.914e-3258.41Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI1.549e-2553.06Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GRS12_ARATH5.700e-2054.35Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GLRX2_MOUSE5.700e-2044.00Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BG11RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929785 ID=FC929785; Name=FC929785; organism=Citrus clementina; type=EST; length=601bp
TTTGTAAAGCCAAAGAGGATTTGAACCTTATTTAGGGTTTGTGAAATTTC
AAATCAAAAACAAAAAAAACCCAAAAATGGCTTTGCCCAAGGCCCAGAAA
ACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTT
CTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGG
CCATTGAACTGGACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTA
GCTGAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATTGGAGGGAA
ACACATTGGTGGCTGCGATTCAACTACTGCACTGCACGGGGAAGGGAAGC
TGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAA
TGGATGGCTATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGT
TGGTAGTGCTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAG
TAATTTCCAATGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTG
TATGAATTTTATCAGATTTTCCATCTACTAAAAAAAAAAAAAAAAAAAAA
A
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