FC929809

Overview
NameFC929809
Unique NameFC929809
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length835
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929809_ssr137 microsatellite FC929809_ssr137:137..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9267 contig Ccv1_Contig9267:2..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.972e-72
Identity = 132/141 (93.62%), Postives = 134/141 (95.04%), Query Frame = -2
Query:  409 VKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 831
            VKAFQ SYY RYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDDQWIFWVGP IGA  AAFYHQ+ILRAAAIKALGSF S
Sbjct:  143 VKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALGSFGS 283          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 8.282e-70
Identity = 124/144 (86.11%), Postives = 135/144 (93.75%), Query Frame = -2
Query:  403 VVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 834
            +VKAFQ +Y++RYGGGAN LA GY++GTGLGAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAVIYNK+K WDD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  147 LVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.082e-69
Identity = 123/144 (85.42%), Postives = 134/144 (93.06%), Query Frame = -2
Query:  403 VVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 834
            + K FQKS+YNRYGGG N ++DGYNKGT LGAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSFG AVI+N +KAWDDQWI+WVGPF+GA VAA YHQYILR +AIKALGSFRSNA
Sbjct:  144 LAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA 287          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.845e-69
Identity = 127/143 (88.81%), Postives = 133/143 (93.01%), Query Frame = -2
Query:  403 VKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 831
            VKAF K+ YN  GGGAN +ADGY+KGT LGAEIIGTFVLVYTVFSATDPKRSARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDDQWIFWVGPF+GA  AA YHQYILRA+AIKALGSFRSNA
Sbjct:  136 VKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALGSFRSNA 278          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 3.147e-69
Identity = 125/143 (87.41%), Postives = 132/143 (92.31%), Query Frame = -2
Query:  403 VKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 831
            VKAFQ SYY+RYGGGAN LADGYN GTGL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK K WDD WIFWVGPFIGA +AAFYHQ++LRA+  K+LGSFRS A
Sbjct:  141 VKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAA 283          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.368e-69
Identity = 125/144 (86.81%), Postives = 134/144 (93.06%), Query Frame = -2
Query:  403 VVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 834
            +VKAFQ +Y+NRYGGGAN LA GY+KGTGL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N EKAW + WIFWVGPF+GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  147 LVKAFQSAYFNRYGGGANTLAAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 7.011e-69
Identity = 121/144 (84.03%), Postives = 134/144 (93.06%), Query Frame = -2
Query:  403 VVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 834
            +VKAFQ +Y++RYGGGAN LA GY++G GLGAEI+GTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAV+YNK+K WDD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  149 LVKAFQSAYFDRYGGGANSLASGYSRGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALGSFRSNA 292          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 7.011e-69
Identity = 125/143 (87.41%), Postives = 131/143 (91.61%), Query Frame = -2
Query:  403 VKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 831
            VKAFQ SYY RYGGGAN LADGY+ GTGL AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK K WDD WIFWVGPFIGA +AAFYHQ++LRA+  K+LGSFRS A
Sbjct:  143 VKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAA 285          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.480e-68
Identity = 124/144 (86.11%), Postives = 134/144 (93.06%), Query Frame = -2
Query:  403 VVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 834
            +VK FQ SYY RYGGGANEL+DGY+KGTGLGAEIIGTFVLVYTVFSATDPKR+ARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARS G AVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  146 LVKGFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK-LGSYRSNA 288          
BLAST of FC929809 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.935e-68
Identity = 125/144 (86.81%), Postives = 134/144 (93.06%), Query Frame = -2
Query:  403 VVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 834
            +VK FQ +YY RYGGGANEL+DGY+KGTGL AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  146 LVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK-LGSYRSNA 288          
The following BLAST results are available for this feature:
BLAST of FC929809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PIP24_ARATH3.972e-7293.62Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP21_MAIZE8.282e-7086.11Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP27_MAIZE1.082e-6985.42Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP27_ARATH1.845e-6988.81Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP22_ARATH3.147e-6987.41Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ORYSJ5.368e-6986.81Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP22_MAIZE7.011e-6984.03Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_ARATH7.011e-6987.41Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP22_ORYSJ3.480e-6886.11Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP24_MAIZE5.935e-6886.81Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AE03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929809 ID=FC929809; Name=FC929809; organism=Citrus clementina; type=EST; length=835bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGAT
GGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGAGTGGTGCCA
AGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAGAG
AAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGTCC
GGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATACC
TGTTGTAGTATGATTTTTGGAAAGCTTTCACAACC
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